GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001732-TA|BGIBMGA001732-PA|undefined
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   1.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.8  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ PQ+ R  P+
Sbjct: 157 PRFIPPNAYRFRPPQNPRFGPT 178


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ PQ+ R  P+
Sbjct: 157 PRFIPPNAYRFRPPQNPRFGPT 178


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ PQ+ R  P+
Sbjct: 395 PRFIPPNAYRFRPPQNPRFGPT 416


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ P + R  P+
Sbjct: 154 PRFIPPNAYRFRPPLNPRFEPT 175


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ P + R  P+
Sbjct: 157 PRFIPPNAYRFRPPLNPRFEPT 178


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ P + R  P+
Sbjct: 157 PRFIPPNAYRFRPPLNPRFEPT 178


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ P + R  P+
Sbjct: 157 PRFIPPNAYRFRPPLNPRFEPT 178


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 112 PDQLPPKDWRFKHPQSVRGPPS 133
           P  +PP  +RF+ P + R  P+
Sbjct: 157 PRFIPPNAYRFRPPLNPRFEPT 178


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 109 SSRPDQLPPKDWRFKHPQSVR-GP 131
           +S P  +PP  +RF+ P + R GP
Sbjct: 382 TSFPRFIPPNAYRFRPPLNPRFGP 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,601
Number of Sequences: 429
Number of extensions: 2351
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 9
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)