GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001731-TA|BGIBMGA001731-PA|undefined
         (104 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical pr...    68   1e-12
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   1.9  
AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical ...    27   1.9  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    27   2.5  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    25   7.7  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    25   7.7  

>Z75546-5|CAA99893.2|  335|Caenorhabditis elegans Hypothetical
           protein R05D11.6 protein.
          Length = 335

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 32/96 (33%), Positives = 61/96 (63%), Gaps = 4/96 (4%)

Query: 6   DVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRIS 65
           DV++ +   ES++ WE+R++F+L H DD+P+ +L  L+Q++ N+  LGC Y    M++I 
Sbjct: 6   DVEAEKKLWESDDAWELRKAFMLAHYDDYPKIQLQCLSQLFINVTLLGCEYSQTLMQKIR 65

Query: 66  VLAEKVSAKYKESRKNKLKRTFVQASDAAEQKAKRT 101
            +   ++A  K+  K     ++V+AS A +++A +T
Sbjct: 66  TMGAGIAAN-KDRTKT---GSYVKASAAKKRQAVKT 97


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 74  KYKESRKNKLKRTFVQASDAAEQKAKRTFKK 104
           KY+E  + KL  T  + SDA +Q+A    K+
Sbjct: 56  KYREETQKKLNETLSKVSDAVKQRADELEKE 86


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 18  EQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLG 53
           EQW+  RS LLEH  D    EL    +I  ++   G
Sbjct: 229 EQWKGARSVLLEHLSDVKIEELKDFNEIQMHVRDSG 264


>AL021175-9|CAA15969.2|  444|Caenorhabditis elegans Hypothetical
           protein Y6E2A.8 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 59  QTMKRISVLAE------KVSAKYKESRKNKLKRTFVQAS--DAAEQKAKRTFKK 104
           +TMKR   + E      K S+K KE  KNK K   ++++   +A++ AK++ KK
Sbjct: 325 ETMKRAEKMKEAELKKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKK 378


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 25  SFLLE-HKDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRISVLAEKVSAKYKESRKNKL 83
           SFL + HK D  +A+L     I  N    G +YP +   R      K   K++E +    
Sbjct: 54  SFLNKRHKCDHVDADLGFGNGIEENQTEYGMQYPAKQAPRYLKTCNKKQLKFRERQAKSR 113

Query: 84  KRTFVQASD 92
             TF+   D
Sbjct: 114 NATFLSDGD 122


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
            protein F40E12.2 protein.
          Length = 1251

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 17   EEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIEF 51
            +++WE R   +L+H D   E +  ++  +YT ++F
Sbjct: 1103 KKKWEQRSCIILKHSDSKIEKKWQSMHAMYTLVDF 1137


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 1   MKPSIDVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIY 46
           + PS+  + LRT   + + +   R+  +E   D P+ E+ T+  IY
Sbjct: 591 LSPSLQTERLRTIVNALDIYFPHRNEPVEMLTDIPKVEMETVKAIY 636


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 1   MKPSIDVDSLRTEHESEEQWEVRRSFLLEHKDDFPEAELVTLAQIY 46
           + PS+  + LRT   + + +   R+  +E   D P+ E+ T+  IY
Sbjct: 589 LSPSLQTERLRTIVNALDIYFPHRNEPVEMLTDIPKVEMETVKAIY 634


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 4   SIDVDSLRTEHESEEQWEVRRSFLL 28
           +I VDS+   H ++  W V++ F+L
Sbjct: 177 TIHVDSVYCSHGTDSTWSVKKPFVL 201


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,977
Number of Sequences: 27539
Number of extensions: 83365
Number of successful extensions: 281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 9
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)