GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001731-TA|BGIBMGA001731-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    26   0.082
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   1.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   7.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 0.082
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 31  KDDFPEAELVTLAQIYTNIEFLGCRYPPQTMKRISVLAEKVSAK 74
           K    EA L   A+   N+  L   +PP   KR+  L E + AK
Sbjct: 443 KSSIEEANLAVSAEREKNVSLLHLIFPPDIAKRL-WLGETIEAK 485


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 34 FPEAELVTLAQIYTNIEFLGC 54
          FP   L+ L  I   I F GC
Sbjct: 50 FPSITLIVLGSIIFVISFFGC 70


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 14  HESEEQWEVRRSFLLEHKDDFPEAELVTLAQIYTNIE 50
           +E  ++W   R F+  + ++    E+V L + Y+++E
Sbjct: 272 YELVKEW---RDFVDNYAEENKRDEIVLLTEAYSSLE 305


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 6   DVDSLRTEHESEEQWEVRRSFLLEH 30
           D+D LR   E  E W  +     EH
Sbjct: 185 DLDVLRQSVEKSELWVYKSKASEEH 209


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 6   DVDSLRTEHESEEQWEVRRSFLLEH 30
           D+D LR   E  E W  +     EH
Sbjct: 153 DLDVLRQSVEKSELWVYKSKASEEH 177


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 78 SRKNKLKRTFVQASDAAEQKAK 99
          S  NKL R  V  +DA   K K
Sbjct: 34 SNYNKLVRPVVNVTDALTVKIK 55


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 17  EEQWEVRRSFLLEHK 31
           E+  E+ R  LLEHK
Sbjct: 141 EQTEEMYREMLLEHK 155


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,451
Number of Sequences: 429
Number of extensions: 887
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)