Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001729-TA|BGIBMGA001729-PA|undefined
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 31 0.15
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 29 0.46
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.80
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 28 1.1
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 27 1.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 2.4
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 27 3.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 3.2
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 27 3.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 3.2
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 4.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.6
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.6
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 26 5.6
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 26 5.6
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 25 7.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 7.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.4
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 7.4
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 7.4
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 9.8
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 9.8
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.8
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 91 NSSVDDEAKIERE--LAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQT 148
NS +D +R E D Q +EA S KEE +L RSR+ R +
Sbjct: 7 NSQREDNYSRDRRSRFTEDSYSRRDSQRSGNEAPRESRYYRKEE-HLQERSRSRSPARDS 65
Query: 149 DWRRNASRNEAVYPPI 164
W+ ++S +PPI
Sbjct: 66 RWKSSSSGFAPAHPPI 81
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.46
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 88 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQ 147
E ++++E + ER++ E+ ++SD + + + + V K I R K+R+
Sbjct: 42 EDEEYNIEEEEEAERDI-EISSESSDEEAELKKLEEEGEEVEK-----ILRDEERIKKRK 95
Query: 148 TDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNY 180
R A+ + PP +R VPKK Y
Sbjct: 96 IQKNRAANLQRTLQPP-KRPTPSAASEVPKKKY 127
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.80
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 37 DNPIKELPPGLEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDD 96
DN E E S+E+ + +S++ ++++ S D
Sbjct: 233 DNDSSSSSSDSESESSSEDSDSSSSSS--DSESESSSKDSDSSSNSSDSEDDSSSDSSDS 290
Query: 97 EAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARS 139
E++ E ++ +SD + S D +S T G + A+S
Sbjct: 291 ESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQS 333
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 49 EEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDDEAKIEREL-AEM 107
+ S+ +D + S++ + ++ S DD + + +E
Sbjct: 235 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESES 294
Query: 108 YKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGK 144
++SD + S++DSSS+ E+GN + SG+
Sbjct: 295 SSEDSDSTSSSSDSDSSSS---SEDGNSNTDTTTSGE 328
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 90 TNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGN 134
TNSS KI E+AE+ NS +S AD SS + E N
Sbjct: 156 TNSSEKSNVKIADEIAEVTHSNS--SIGKSSADLSSDSSSDSESN 198
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 137 ARSRASGKRRQTDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYF-FFSFKFQPNLNSRE 195
AR++A+ K R+ +NE P R HF +Q + YF SF + ++E
Sbjct: 357 ARAKAAAKAREL------KKNEVNAPTYARDHFASQKSISSDQYFGRGSFDPEAAAEAQE 410
Query: 196 EIERFR 201
+ FR
Sbjct: 411 RLSSFR 416
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 48 EEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDDEA--KIERELA 105
E E S+ E +S + + ++ S ++EA KIE +
Sbjct: 102 ESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKE 161
Query: 106 EMYKDNSDYQTDRSEADSSSTTVHKEE 132
+S+ + SE++SSS+ +EE
Sbjct: 162 SSSDSSSESSSSESESESSSSESEEEE 188
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 86 RAETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEE 132
+A + ++D + K+ERE+ + +D +R A T+H+ +
Sbjct: 508 KASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELETMHRSQ 554
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 87 AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSR 140
+ T +S+ E + ++ ++ K S+ +SE D S +E N+I S+
Sbjct: 49 SRTIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQICQSFDESNIITPSK 102
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 101 ERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEAV 160
+ E+ E K ++++ + E T+++ + + D R S + V
Sbjct: 833 DTEVDEYPKASNEWIVESEELPQVHETINQYRKSCETQRSRKSHEGSNDLERQPSSPDTV 892
Query: 161 YPPIRRHHF 169
+P I+R HF
Sbjct: 893 HPGIKRSHF 901
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 106 EMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQ 147
E +NSDY +D SS + + + I+RS + G Q
Sbjct: 245 EKCSENSDYSSDSGSYSSSYSRHLDDRASYISRSSSGGSNAQ 286
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 137 ARSRASGKRRQTDWRRNASRNEAVYPPIRRHHFKNQLGV 175
A G R +D+RR A E VY P++ + N +G+
Sbjct: 167 AMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGL 205
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 106 EMYKDNSDY-QTDRSEADSSSTTVHKEEGNLIA---RSRASGKRRQTDWRRNASRNEAVY 161
E++ ++ + D E ++ + +HK + L A R+R+S R++ R+ S + +Y
Sbjct: 521 EVFDSGDEFLEDDGEEFEAVNRQIHKLQSTLQAMKSRARSSSVSRRS---RSRSLSVDIY 577
Query: 162 PPIRRHHFKNQL 173
PPI + +N+L
Sbjct: 578 PPI-TYEMQNEL 588
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 96 DEAKIERELAEMYKDN----SDYQTDRSEADSSSTTVHKE 131
+E K +R LAE Y++ S+ T +SEAD H+E
Sbjct: 401 NENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEHEE 440
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 143 GKRRQTDWRRNASRNEAVYPPIRRHHFKNQL 173
G +T ++R + NEA Y + +H KNQ+
Sbjct: 730 GITEKTPFKRMQTTNEACYEKVMQHAGKNQV 760
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 34
R+ L L+TI A NVK+++E L EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 34
R+ L L+TI A NVK+++E L EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 17 AKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSA 53
A ++ V+ L E RE ++ + KE GLEE P +
Sbjct: 5 ASDSGVEKLVEENKREEVKKNEEEKEFDLGLEENPDS 41
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 130 KEEGNLIARSRASGKRRQTDWRRNAS 155
+E+ +++RSR+S +R+T + +N +
Sbjct: 70 EEQSRILSRSRSSNNKRRTSFGKNGA 95
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 89 TTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQT 148
+TN+S + + E+E + N + + S D+ + T+H GN + RS RQ
Sbjct: 73 STNASNTNISFPEQEHKDELFMNVEPKGVGSSMDNHAITIHHSTGNGLLRSSFDHDYRQK 132
Query: 149 DWRRNA 154
+ RN+
Sbjct: 133 NSPRNS 138
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 90 TNSSVDDEAKIERELAEMYKDNSDYQTDRSEADS--SSTTVHKEEGNLIARSRASGKRRQ 147
+++S+D++++ + KDNS + D E D+ S + + I+ + AS +
Sbjct: 15 SHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGN 74
Query: 148 TDWRRN--ASRNEAVY 161
++ N +SR+E VY
Sbjct: 75 SENTSNYGSSRDENVY 90
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 163 PIRRHHFKNQLGVPKKNYFFFSFKFQPNL 191
PIR+H + KNY+ F FKF L
Sbjct: 167 PIRKHRL-----IANKNYYLFLFKFNRKL 190
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 18 KNNNVKTLTESLGREIIEIDNPIKEL 43
+N N++ + ++G E++E + IKEL
Sbjct: 145 ENENLQDMLRNVGNELVESRDEIKEL 170
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 110 DNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNAS 155
D+ D T +E D+ STT L+A+ + + ++T +N S
Sbjct: 102 DDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNES 147
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 88 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTT 127
E+ + ++ + KIE E E+ +D+ + + + E +STT
Sbjct: 196 ESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTT 235
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,314
Number of Sequences: 5004
Number of extensions: 41867
Number of successful extensions: 156
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 29
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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