Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001729-TA|BGIBMGA001729-PA|undefined
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 32 0.36
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 31 1.1
07_03_0362 - 17217515-17217604,17217690-17217779,17217866-172179... 30 1.5
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 30 1.9
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 30 1.9
06_03_1236 - 28597863-28598375,28598745-28598890,28599014-285992... 29 2.5
09_04_0377 + 17086775-17088310 29 4.4
01_03_0172 + 13425443-13426192 29 4.4
11_06_0348 - 22561589-22563656,22563788-22564602 28 5.9
02_02_0353 + 9276316-9276518,9276915-9277314 28 5.9
02_02_0189 - 7626848-7626865,7626995-7627270 28 7.8
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 28 7.8
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 32.3 bits (70), Expect = 0.36
Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 47 LEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDDEAKIERELAE 106
LE+ S+ + + T+ L A N D E ++ER ++
Sbjct: 441 LEKAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELER-ISI 499
Query: 107 MYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEAVYP-PIR 165
M+K+N D + S + TV ++ +A + G + + ++ ++ EAV
Sbjct: 500 MHKNNEDLELVNSNLQNDLATVQGQKNEAVASTLELGNKLEEKNQQISNLQEAVENLEAA 559
Query: 166 RHHFKNQLGVPKKNYFFFSFKFQPNLNSREEIERFRTSVD 205
+ + N++ V ++ F S + + + +E++ + ++
Sbjct: 560 KTNMYNEVTVHQEKCTFLSSQLEKAQLAEKEVQTLLSEIE 599
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 40 IKELPPGLEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDDEAK 99
+ E GL+ EP EN GT P E S ++
Sbjct: 553 LDEFMQGLDSEPPFENLSAGT-----PEEDSDDRDEADTTAESAELPEEEVKVSAAEKIV 607
Query: 100 IEREL-AEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNE 158
E +L + K S ++ + E S+ V + EG LI S S + +QT +R+
Sbjct: 608 SEADLPSSQDKSESKLESPKDEVGSNLGPVEQREGKLIKSSPDSVEVKQTTTENVLNRDS 667
Query: 159 AVY 161
V+
Sbjct: 668 TVH 670
>07_03_0362 -
17217515-17217604,17217690-17217779,17217866-17217935,
17218362-17218425,17219117-17219204,17219631-17219726,
17219858-17219968
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 189 PNLNSREEIERFRTSVDDISCDKVTQRLGLVKPYYDIR 226
P+L SR ++ + ++ + DKV LGL YDIR
Sbjct: 15 PHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIR 52
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 88 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQ 147
ET S + K+++ ++ + +YQ +S D S+T ++ + + AS R
Sbjct: 734 ETLTSDISCLTKLKKTDSDHEDELDEYQDQQSIRDGSTTLRTVKDVGIDSSLSASPSRWP 793
Query: 148 TDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQPNLNSREEIERFRTS 203
D+ + R E I+ H N + + YFF FK P N E+E R S
Sbjct: 794 IDFEK--MRQEI----IQLWHECNA-PIVHRTYFFLLFKGDPADNIYMEVEHRRLS 842
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 91 NSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDW 150
N + DDE+ E E KD+S TD S + S ++ E ++ AS +
Sbjct: 473 NQTGDDESDEEDEDFVADKDDSGSPTDDSGEEGSDASLSGGEKEKSSKKEASSSKAPLKK 532
Query: 151 RRNASRNEAVYPPIRRHHFKNQLGVPKK---NYFFFSFKFQPNL-NSREEI 197
R+ + A R+ K PK+ + +FS + NL NS E+
Sbjct: 533 RKPKGGDAAEGSEKRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPEL 583
>06_03_1236 -
28597863-28598375,28598745-28598890,28599014-28599247,
28599421-28599688
Length = 386
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 6 FLVLLTIHLA--------VAKNNNVKTLTESLGREIIEIDNPIKELPPGLEE 49
F VL+ +HL A N++ T SLG I + N IKE PPG+ E
Sbjct: 10 FSVLVALHLCCCHGQAPDAAGNSSDVTAIYSLGDSITDTGNLIKEAPPGMFE 61
>09_04_0377 + 17086775-17088310
Length = 511
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 95 DDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNA 154
D+E + E + K S +++ ++ SS + E +L S++ RR+ R+ +
Sbjct: 161 DEEEEEEEKKESPKKVASSDKSEEEDSKGSSESDSGESDSLSDSSKSDDTRRKKKGRKGS 220
Query: 155 SRNEAVYPPIRRHHFKNQLG 174
R+ RRHH + G
Sbjct: 221 HRSSKRSRHRRRHHSSDTEG 240
>01_03_0172 + 13425443-13426192
Length = 249
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 117 DRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNA 154
DR++ D + + +G IARS +S RQ D +R A
Sbjct: 56 DRTDGDDRTMKEEETDGIAIARSASSNGSRQQDKKRGA 93
>11_06_0348 - 22561589-22563656,22563788-22564602
Length = 960
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 8 VLLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSAENDEDGTSAT 63
V L ++ + N+K E++ +E+ + NPI G++ E + +E+ AT
Sbjct: 865 VALCYNVRYMNSPNIKRKVEAVSKEVAKHRNPIDLFIRGMQIEVNQAGEEEAEGAT 920
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 110 DNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEAVYPP 163
D+ + D +H+ EG + RSR+ +RR+ W ++S + PP
Sbjct: 129 DDGGVEVGLHRVDDVLAELHQAEGLVDDRSRSRHRRRRRRWCPSSSPRRSPAPP 182
>02_02_0189 - 7626848-7626865,7626995-7627270
Length = 97
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 100 IERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRR 152
+ EL ++D S++ + ++ S V + E ++A GKRR+ WRR
Sbjct: 42 VSEELLGKFQDTSEFGFEYEKSGLWSPLVVRPEALVLA---GGGKRRRRSWRR 91
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 92 SSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIA 137
S + +K+E LA+ + D +D + R E + KEE ++ A
Sbjct: 432 SRKSESSKLESALAKKHNDYNDLRKQRDELQEERKSFWKEEADVTA 477
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,246,934
Number of Sequences: 37544
Number of extensions: 234264
Number of successful extensions: 698
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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