GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001729-TA|BGIBMGA001729-PA|undefined
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49013| Best HMM Match : IBB (HMM E-Value=1.6)                       32   0.37 
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   32   0.49 
SB_30745| Best HMM Match : UIM (HMM E-Value=1.9)                       32   0.49 
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            30   1.5  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   30   2.0  
SB_9285| Best HMM Match : Ribosomal_S30AE (HMM E-Value=4.8)            29   2.6  
SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)                 29   3.4  
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         28   6.0  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  28   6.0  
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   28   7.9  
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 28   7.9  
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_49013| Best HMM Match : IBB (HMM E-Value=1.6)
          Length = 216

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 87  AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRR 146
           A++ +   D + K E +L E+YKD  +    R+ A  + +TV  EE    A+ +A  K+R
Sbjct: 30  AQSKSWDNDTKKKFEGKLLELYKDTVEDSVKRNVAVENPSTVDSEEKE--AKKKAEKKKR 87


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 88  ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQ 147
           +++ SS+D E   +RE  E  K N   +  +S+  SSS +    +    A+S+ + K ++
Sbjct: 242 DSSESSIDSED--DRERKERKKKNKKEKKHKSKETSSSESNKSSDSEEKAKSKKNKKDKK 299

Query: 148 TD---WRRNASRNEAVYPPIRRHHFKN 171
            D    ++++ +     PPI  + F N
Sbjct: 300 NDKDSSKKSSVKGTEETPPITANKFNN 326


>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 462

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 87  AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRR 146
           A +   S D +  +    +  Y  N+DY  +++E DS     H+ EG+  +    S  RR
Sbjct: 2   ASSEQQSADQQLALAMAYSNAYSKNTDY--NKAEDDSR----HQREGSRDSDREDSDSRR 55

Query: 147 Q------TDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQ 188
           +       D +R+       Y P   +      G P+K  F  +  F+
Sbjct: 56  RGGNFERNDLKRDRESTSRRYTPYDTNRRSRSSGAPEKKVFVSNIPFE 103


>SB_30745| Best HMM Match : UIM (HMM E-Value=1.9)
          Length = 116

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 87  AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRR 146
           A +   S D +  +    +  Y  N+DY  +++E DS     H+ EG+  +    S  RR
Sbjct: 2   ASSEQQSADQQLALAMAYSNAYSKNTDY--NKAEDDSR----HQREGSRDSDREDSDSRR 55

Query: 147 Q------TDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQ 188
           +       D +R+       Y P   +      G P+K  F  +  F+
Sbjct: 56  RGGNFERNDLKRDRESTSRRYTPYDTNRRSRSSGAPEKKVFVSNIPFE 103


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 91   NSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKE 131
            N+  DD+   + E  + Y DN D   D  +ADS  T+  K+
Sbjct: 1278 NNEHDDDHDFDDENDDDYDDNDDDDGDSDDADSDKTSSQKD 1318


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 109 KDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEAVYPPIRRHH 168
           K   D    R  + S S ++ + +    +RSR+S +RR++  R    R  +     RR H
Sbjct: 295 KSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRRRSRSRSTEHRYRSRSRSPRRKH 354

Query: 169 FKNQLGVPKKNY 180
            ++    P + Y
Sbjct: 355 RRSTSTSPSRRY 366


>SB_9285| Best HMM Match : Ribosomal_S30AE (HMM E-Value=4.8)
          Length = 174

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 100 IERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNL-IARSRASGKRRQTD 149
           +++E+ +   DN+D+ T   + D+ +   H EE NL   R R SG+ R+ +
Sbjct: 114 LKKEIGQFGDDNNDFSTAEDD-DARNRLRHIEEENLKRQRERRSGRSRRQE 163


>SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)
          Length = 633

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 15  AVAKNNNVKTLTESLGREIIEID--NPIKELPPGLEEEPSAENDEDGTSATLRPXXXXXX 72
           A+ KN N  +L +    E I+ID  N + +     E+    E  E+G +           
Sbjct: 79  AITKNENETSLEQEEFSENIDIDVTNVVNQENAKEEDSDDRETGEEGKAVKPDSGKESTE 138

Query: 73  XXXXXXXXXXXXXRAET----TNSSVDDEAKIERELAEMYKDNSDYQTDRSEA 121
                        R E     T   +D+EAK   +   + + N D Q D SE+
Sbjct: 139 VDAGSEDNEFFDCRDEASANKTQMQIDEEAKTFPDDTAVEQQNDDKQEDMSES 191


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 94  VDDEAKIERELAEMYKDNSDYQTD--RSEADSSSTTVHKEEGNLIARSRASGKRRQTD-- 149
           ++D  K+  +    Y D +       R      +++  KEE N ++ +++    ++T   
Sbjct: 20  MNDLEKVLSDYTRSYYDAAPIHASFQRKSPTKVASSPEKEENNDLSENKSLSDHQETQVQ 79

Query: 150 -WRRNASRNEAVYPPIRRH 167
            W RNAS N   +  I  H
Sbjct: 80  KWHRNASHNSTSWQNINIH 98


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 97  EAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASR 156
           + K+  ++    K +++   D S+A  SS    +EE   + +     KR++ D      +
Sbjct: 208 DQKMRDKVRNKLKKSTNLAEDASQASGSSDKTLREESRRLQKELVGAKRKRVDAENQTEK 267

Query: 157 NE 158
            E
Sbjct: 268 KE 269


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 109 KDNS-DYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEAVYPPIRRH 167
           KD + D + DR  + S ST   K      +RSR+  K R+    R+ SR+       RR 
Sbjct: 189 KDKAQDTEKDRKSSRSPSTDKRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRS 248

Query: 168 HFKNQLGVPKKN 179
               +   P+++
Sbjct: 249 RSPQKSRSPQRS 260


>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 11  TIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSAENDE 57
           TI  AV  N   K + + +G +  E +    ELPP +EE+ + E++E
Sbjct: 122 TITAAVPVNQEEKLVKKGVGVQARETE----ELPPEMEEDDNTEDEE 164


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 88  ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGK 144
           E   ++   + +IE   AE+ K  ++ +  RS+ +    T+   +  + AR+RA+G+
Sbjct: 154 ELLKAAQTQDQEIESLRAELRKSKAELKAGRSQNEDYKKTLELLQDRIKARARAAGQ 210


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 40  IKELPPGLEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXXRAETTNSSVDDEAK 99
           ++++   LEE+   E +++     L                     R E      + + K
Sbjct: 139 MEQIAMELEEKRKEEEEKEKQRKQLEVEKQKRLEEERIRSQNEERKRREREQKEREKQQK 198

Query: 100 IERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASRNEA 159
           ++ E  E  +   + +  R E +     V KE+      ++ + KR+Q   R +  +   
Sbjct: 199 LDMEKEERRRRQQEEEKKRREEEEKRKKVEKEKQEREKAAKKNIKRQQQQQRTDQQQYPR 258

Query: 160 VYPP----IRRHHFKNQLGVP 176
             PP    ++R   + QL  P
Sbjct: 259 EIPPRFQKMKRQQQQQQLQTP 279


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/73 (23%), Positives = 33/73 (45%)

Query: 86  RAETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKR 145
           +A+  +SS DD +  E E  +   DN   +T   +  SS      +E     + +A  K 
Sbjct: 174 QAKQESSSEDDSSDEEDEKPKKKADNKGKKTQAKQESSSEEDDSSDEEEEKPKKKADDKV 233

Query: 146 RQTDWRRNASRNE 158
           ++T  ++ +S  +
Sbjct: 234 KKTPAKQESSSED 246


>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 87  AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRR 146
           +E  +S   DE   E    E Y    +  T  SE D+SS T  K     + R+  + +R 
Sbjct: 322 SEYLSSEESDEDVNEEFDLEKYIRKLERGTSSSEDDASSVTSEKLINRAVLRATKNFRRA 381

Query: 147 QTDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQPNLNSREEIERFRTSVDD 206
             D  +  S +E+            +   PKK     S   Q + +S EE + F    DD
Sbjct: 382 NVDTVKQNSDSESSDSEPEVEPKPKKEKPPKKEQ---SGSEQSSGSSSEETDSFLDFTDD 438

Query: 207 IS 208
            S
Sbjct: 439 ES 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,462,297
Number of Sequences: 59808
Number of extensions: 284376
Number of successful extensions: 765
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 22
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)