GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001729-TA|BGIBMGA001729-PA|undefined
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical...    31   0.56 
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    31   0.74 
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    31   0.74 
U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin...    29   3.9  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    29   3.9  
Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical p...    28   6.9  
U46668-1|AAA93344.1|  181|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical
           protein C49G7.1 protein.
          Length = 611

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 90  TNSSVDDEAKIERELAEMYKD-NSDYQTDRSEADSSSTTVHKEE--GNLIARSRASG--- 143
           T + ++D  K+++E++ + ++  + YQT ++ A + +TT +        +  SR  G   
Sbjct: 23  TIAHLEDLQKVQKEVSNVRREIRATYQTGKTNASTLNTTTNPVLMLPTPVQLSRQLGLCT 82

Query: 144 KRRQTDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQPNLNSREEIERFRTS 203
           +      +   SR++    P  R    N+        F  +        SR ++E F+  
Sbjct: 83  RVLNNIEKARQSRSQLENLPNGRFSEFNKSLEEMSEIFDIASSVLGIAGSRSDLEHFQKE 142

Query: 204 VDDISCDKVTQRLGLVKPYYDIRLEKLNYKKIK 236
           +  IS D+  +   + K Y D+ L+ L++ K K
Sbjct: 143 LTRISDDEAAKTAVVFKEYLDLNLD-LSFSKYK 174


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 150 WRRNASRNEAVYPPIR-RHHFKNQLGVPKKNYFFFSFKFQPNLNSREEI 197
           WRRN+++   V   +  RH FK+   V K N      K + +L+SR+ +
Sbjct: 251 WRRNSAKKPEVLRRVPVRHQFKHSTSVRKMNTIIDLKKIKNHLSSRDRL 299


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 150 WRRNASRNEAVYPPIR-RHHFKNQLGVPKKNYFFFSFKFQPNLNSREEI 197
           WRRN+++   V   +  RH FK+   V K N      K + +L+SR+ +
Sbjct: 251 WRRNSAKKPEVLRRVPVRHQFKHSTSVRKMNTIIDLKKIKNHLSSRDRL 299


>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 137 ARSRASGKRRQTDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFKFQPNLNSREE 196
           +R R+S +     W RN   N   Y   R  H +NQ G    N F   F  + N N+  E
Sbjct: 594 SRERSSNRNYDERWSRNDYSNPRNYSN-RSFHQRNQRGHSSSNRFNSPFVSRNNYNNNSE 652


>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 145 RRQTDWRRNASRNEAVYPPIRRHHFKNQLGVPKKNYFFFSFK-----FQPNLN----SRE 195
           +RQ D  RN   N+ +Y  I++   K +  V ++N     FK     FQP L      ++
Sbjct: 115 QRQLDLNRNNQNNDKIYEAIKKEKEKIRKNVYERNEQLRDFKNIPYGFQPTLELHNLMQD 174

Query: 196 EIERFRTSVDDISCDKVTQRLGLVKPY 222
           +IE F         +K+  +LGL K Y
Sbjct: 175 QIEDFIEEYLGQYLEKL-GKLGLGKKY 200


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 9   LLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGL----EEEPSAENDED 58
           +L + LA+ K    K + +    E++    P+ E+PP +    EEE   E DED
Sbjct: 350 VLRLQLAIIKEEQKKEIQQQESEELL----PVAEVPPQVKIQKEEEEEEEEDED 399


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 9   LLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGL----EEEPSAENDED 58
           +L + LA+ K    K + +    E++    P+ E+PP +    EEE   E DED
Sbjct: 350 VLRLQLAIIKEEQKKEIQQQESEELL----PVAEVPPQVKIQKEEEEEEEEDED 399


>AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform c protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 101 ERELAEMYKDNSDYQTDRSEADSSSTTV-HKEEGNLIARSRASGKRRQTDWRRNASRNEA 159
           E   + ++  NSD++ +R  A + +  + H    +L+  S  S  R   +   N   +  
Sbjct: 230 ESPSSSVFPHNSDFERNRGGAPNRAHQLRHPTTSHLLNTSVTSSIRANVNSNSNTPIHSR 289

Query: 160 VYPPIRRHHFKNQLGVPKKNYFFFSFKFQPNLN 192
           +   I++HH    L V +         +QP+ N
Sbjct: 290 IGSAIKKHHKDFVLEVQRSAVKLCQVHWQPHSN 322


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 140 RASGKRRQTDWRRNASRNEAVYPPIRRHHFKNQ-LGVPKKNYFFFSFKFQPNLNSREEIE 198
           R  GK R           ++ Y PI R  F++  + +P K      FK +P   +REE E
Sbjct: 833 RTVGKMRSELGMGTPQNKDSDYKPIVRKEFESAPIHLPPKLQKSLPFKMKPTYQAREEKE 892

Query: 199 R 199
           +
Sbjct: 893 K 893


>Z48230-1|CAA88262.2|  587|Caenorhabditis elegans Hypothetical
           protein F42G10.1 protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/43 (30%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 87  AETTNSSVDDEAKIERELAEMYK--DNSDYQTDRSEADSSSTT 127
           + +++S  D+E+ +EREL E+    D+S+ +T+  +++ +ST+
Sbjct: 525 SSSSSSESDEESSVERELDEVSDGLDDSENETELRKSEIASTS 567


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 97  EAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQTDWRRNASR 156
           EA  +R  +E++    +YQ D+  +    T  H E  +  AR     K  + + RR A  
Sbjct: 272 EADRQRMASEIHSKTENYQPDKVTSVYKPTKPHVEISS-SAREEFWSKMNEEEQRRQAEE 330

Query: 157 NEA 159
            EA
Sbjct: 331 KEA 333


>U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical
          protein C28H8.1 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 40 IKELPPGLEEEPSAENDEDGTSATLRP 66
          +KE+     + PSAEN +D TS T  P
Sbjct: 67 VKEVDEESNQVPSAENSQDSTSVTQPP 93


>U46668-1|AAA93344.1|  181|Caenorhabditis elegans Hypothetical
           protein F38E9.6 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 179 NYFFFSFKFQPNLNSREEIERFRTSVD 205
           N+FF+S  FQP+ N    +E F    D
Sbjct: 54  NFFFWSSTFQPSFNDGNSLEGFGEYAD 80


>U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical
           protein F08F8.2 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 87  AETTNSSVDDEAKIERELAEMYKDNSDYQTD-RSEADSSSTTVHKEEGNL 135
           A TTN  V    K+ R   ++Y D+S   T    E + + + +  + GN+
Sbjct: 485 ALTTNELVSSHMKLNRSKQQLYADDSGKATHFEKEVEKAGSLLSGKSGNI 534


>AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical
           protein D1007.16 protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 88  ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGKRRQ 147
           ++   S DDE + E+ L E  K    Y        SSS T + +E ++     +SG + +
Sbjct: 174 KSNGDSSDDEDESEKILLEEMKKPKPYTEREPAPPSSSNTYNHKESHVAPYISSSGNKNK 233


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,666,138
Number of Sequences: 27539
Number of extensions: 227956
Number of successful extensions: 743
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 18
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)