GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001729-TA|BGIBMGA001729-PA|undefined
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   4.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 8   VLLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPS 52
           +L+  HL+   N N   +  +L  E+      +  +PP    EP+
Sbjct: 669 ILMIEHLSPDHNGNYSCVARNLAAEVSHTQRLVVHVPPRWIVEPT 713


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 4  IHFLVLLTIHLAVAKNNNVKTLTESLGREIIEIDNPI 40
          + FL  L +H AVA N + K L + L     ++  P+
Sbjct: 11 VWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPV 47


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 4  IHFLVLLTIHLAVAKNNNVKTLTESLGREIIEIDNPI 40
          + FL  L +H AVA N + K L + L     ++  P+
Sbjct: 11 VWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPV 47


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 183 FSFKFQPNLNSREEIERFRTSVDD 206
           F+FKF  + NS    E+F+  +D+
Sbjct: 319 FNFKFITDANSSSTPEQFKVIIDN 342


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 99  KIERELAEMYKDNSDYQTDRSEADSSSTTV 128
           +IE+  +E  K  S    DRS A ++S TV
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTV 100


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,123
Number of Sequences: 429
Number of extensions: 3039
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)