GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001728-TA|BGIBMGA001728-PA|IPR011013|Galactose
mutarotase-like, IPR011682|Glycosyl hydrolases 38, C-terminal
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   1.6  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   6.4  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   6.4  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 204  NNGYVVSKDMFISNKYIRINLDSTRKITNLTLSNNVFLALDVQFYYYAS 252
            N+   + K++   N++  +  DS   +T + + NNVF  L V FY Y S
Sbjct: 2947 NDWAEIKKNLNKLNEFQPLKFDSEESVTEIFM-NNVFQNLCVVFYVYTS 2994


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 486 MNHKPNMIYEKRLAKEISLEPKVLVSEYGGYGPYLKSKWLGETNEFSALKKKLPLGIHLL 545
           +N     + + +    + L+ +V+ SEY      LK       N F  L++++ L  H L
Sbjct: 669 VNKSAGPLLQIQKLNSLQLKLQVVTSEYEKLETQLKDLKTQNAN-FHRLEQEIQLKQHEL 727

Query: 546 S--IEQWNEATVLIRLENYLEKSDAIRSGIKRVYLRDVFVNLRIRSIAECALGGNVWLKD 603
           +  IEQ    +    L +Y +  D ++   +R+   D  +    ++I +        +++
Sbjct: 728 TLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQSDQAIKKIERD----MQE 783

Query: 604 WSPLRWNKKTEFMRSFNEY 622
           W   + +K  E  + FN+Y
Sbjct: 784 WKHNKGSKMAELEKEFNQY 802


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 411 PVTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDETGTEMNLNETEYD 470
           P+TS  Y+   Q++ R +   DR  G  +L  G        R LTD++  +    ET  +
Sbjct: 54  PITSVPYVLLIQRSFRDT---DRWSGHMALPGGT-------RSLTDKSDIQTAHRETLEE 103

Query: 471 RGLIVRGKHILYATKMNHKPNMIYEKRLAKEISLEPKVLVSEYGGYGPYLKSKWLGETNE 530
            G+ +R +H        H    + E+ +       P +L+S +    PY+ S  L E+  
Sbjct: 104 VGIDLRKEHA-------HFVGALDERVITSNWGQFPLLLLSSFVFILPYMPSLRLQESEV 156

Query: 531 FSA 533
           FSA
Sbjct: 157 FSA 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,178
Number of Sequences: 5004
Number of extensions: 126506
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 5
length of query: 673
length of database: 2,362,478
effective HSP length: 77
effective length of query: 596
effective length of database: 1,977,170
effective search space: 1178393320
effective search space used: 1178393320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)