Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001728-TA|BGIBMGA001728-PA|IPR011013|Galactose
mutarotase-like, IPR011682|Glycosyl hydrolases 38, C-terminal
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 86 1e-16
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 80 5e-15
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 42 0.002
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 33 0.56
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929... 32 1.3
02_01_0454 + 3263666-3265375 31 3.9
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 30 5.2
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 30 5.2
02_01_0404 - 2945611-2948802 29 9.1
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 85.8 bits (203), Expect = 1e-16
Identities = 36/117 (30%), Positives = 70/117 (59%)
Query: 257 DTGRTDKKNPGVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCAYSDYVSFVARLYTDL 316
D +D + G Y+FRP + PI + V + +++E+H + ++ + R+Y
Sbjct: 615 DGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQINPWIYQINRVYKGK 674
Query: 317 PYIEVDWVVGPVPVEDGWGKDVFLRYTTDLGNDGAFYTDANGRQTLKRLRNLRATYE 373
Y+E +++VGP+PV+DG GK++ T++ + FYTD++GR +KR+R+ R+ ++
Sbjct: 675 DYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFIKRIRDYRSEWK 731
Score = 62.5 bits (145), Expect = 1e-09
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 407 GNLYPVTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDE-TGTEMNLN 465
GN YPV IY+ED + L SI DR+ GG S+ DG+++LM+ RR+L D+ G LN
Sbjct: 740 GNYYPVNLGIYVEDGSREL--SILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALN 797
Query: 466 ETE-YD---RGLIVRGKHIL 481
ET +D GL+++GK+ L
Sbjct: 798 ETTCFDNQCEGLVIQGKYYL 817
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 80.2 bits (189), Expect = 5e-15
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 30/176 (17%)
Query: 294 VVEEIHCAYSDYVSFVARLYTDLPYIEVDWVVGPVPVEDG--WGKDVFLRYTTDLGNDGA 351
+V+E+H +S ++ V RLY + + EV++ +GP+PV+D GK+V R TT++ +
Sbjct: 642 LVDEVHQQFSSWIYQVTRLYKNKEHAEVEYTIGPIPVDDDDDIGKEVVTRLTTNMATNKI 701
Query: 352 FYTDANGRQTLKRLRNLRATYEPKSSKIXXXXXXXXXXXXXVTDKPFQYPCFIFPGNLYP 411
FYTD+NGR L+R+RN R ++ S+ YP
Sbjct: 702 FYTDSNGRDFLERVRNHRDDWDLNLSQPVAGN---------------YYP---------- 736
Query: 412 VTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDE-TGTEMNLNE 466
V IY+ D + L S+ D A G +S+ DG++++M+ RR+ D+ G LNE
Sbjct: 737 VNQGIYVADGKYEL--SVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNE 790
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 407 GNLYPVTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDE 457
GN YP+ S +++D N RFS+ + ++ G SL +G L++M+ RR+ D+
Sbjct: 920 GNYYPMPSLAFLQDSLGN-RFSVHSKQSLGAASLKNGWLEIMLDRRLTQDD 969
Score = 35.5 bits (78), Expect = 0.14
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 252 SDKPTDTGRTDKKNPGVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCA-----YSDYV 306
+D + G G YLF+P+ + + I+ + +V+E H + +
Sbjct: 789 TDVGEEIGMYRSHGSGAYLFKPIGEAQSIVEEGGYFILSEGPLVQEAHSLPKTQWHKSPI 848
Query: 307 SFVARLYTDLPYIEVDWVVGPVPVE-DGW---GKDVFLRYTTDLGNDGAFYTDANGRQTL 362
S R+Y+ I+ + VE G K++ +R+ TD+ N G FY+D NG Q
Sbjct: 849 SHSTRIYSCGDSIQDMLIEKEYHVELVGHVFNDKELIVRFKTDIDNQGVFYSDLNGFQMS 908
Query: 363 KR 364
+R
Sbjct: 909 RR 910
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 33.5 bits (73), Expect = 0.56
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 259 GRTDKKNPGVYLFRPVDS-NPIPILDFIETIVYKTRVVEEIHCAYSDYVSFVARLYTDLP 317
G TDK + +D N + ++D+IE I YK V E C DY+ + + +
Sbjct: 166 GITDKPREVIEDIDKLDGDNELAVVDYIEDI-YKFYKVAENECRPCDYIDTQVEINSKMR 224
Query: 318 YIEVDWVV 325
I DW++
Sbjct: 225 AILADWII 232
>04_04_0807 -
28192320-28192494,28192611-28192759,28192882-28192980,
28193212-28193433,28193522-28193611,28193837-28193959,
28194040-28194199,28194288-28194347,28194484-28194574,
28194667-28194730
Length = 410
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 249 YYASDKPTDTGRTDKKNPGVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCAYSDYVSF 308
Y A D+ DT D+ + + NP+ +++E + R EE+ C DY+S
Sbjct: 122 YIAVDECNDT---DEDESMMDIDSADSGNPLAATEYVEELYKFYRENEEMSCVQPDYMSS 178
Query: 309 VARLYTDLPYIEVDWVV 325
+ + I +DW++
Sbjct: 179 QGDINEKMRAILIDWLI 195
>02_01_0454 + 3263666-3265375
Length = 569
Score = 30.7 bits (66), Expect = 3.9
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 540 LGIHLLSIEQWNEATVLIRLENYLEKSDAIRSGI--KRVYLRDVFVNLRIRSIAE 592
L IHL +++ + + +R + + AI + + KR Y+ D+F+ +RI +A+
Sbjct: 105 LDIHLKDLKEMVSSRISVRSQAVIATRPAIGASLSNKRFYINDLFLRVRIGDLAQ 159
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 30.3 bits (65), Expect = 5.2
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 428 SIFNDRAQGGTSLTDGELD-LMIIRRILTD 456
S ND A GG SLTDGEL+ L +IL+D
Sbjct: 697 STANDMAVGGRSLTDGELERLQQALKILSD 726
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 30.3 bits (65), Expect = 5.2
Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 433 RAQGGTSLTDGELDLMIIRRILTDETGT--EMNLNETEYDRGLIV-RGKHI---LYATKM 486
R +G ++L + ++D + + T + E N+ T L+ +H+ L K+
Sbjct: 1048 RGRGRSALAENDMDFHETSALSSPSTTSDKEDNIEFTSQQPCLVSPAAEHVSNTLLNPKI 1107
Query: 487 NHKPNMIYEKRLAKEISLEPKVLVSEYGGYGPYLKSKWLGETNEFSALKKKLPLGIHLLS 546
NH+ + I+ + +++ L + + Y PYL+ L ++ +L +
Sbjct: 1108 NHRSDAIFGDQAVEQLKLRHHKPLKFHERYRPYLRDAGLLGLSQICQKMPQLDKALITAL 1167
Query: 547 IEQWNEAT 554
+E+W T
Sbjct: 1168 VERWRPET 1175
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 29.5 bits (63), Expect = 9.1
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 580 DVFVNLRIRSIAECALGGNV--WL 601
D F NL++ SIA C+L GN+ WL
Sbjct: 454 DGFQNLKVLSIANCSLSGNIPLWL 477
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,027
Number of Sequences: 37544
Number of extensions: 718036
Number of successful extensions: 1303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 16
length of query: 673
length of database: 14,793,348
effective HSP length: 87
effective length of query: 586
effective length of database: 11,527,020
effective search space: 6754833720
effective search space used: 6754833720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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