Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001728-TA|BGIBMGA001728-PA|IPR011013|Galactose
mutarotase-like, IPR011682|Glycosyl hydrolases 38, C-terminal
(673 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 132 1e-30
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr... 44 5e-04
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr... 44 5e-04
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 32 1.1
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 32 1.1
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 30 4.6
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 30 4.6
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 132 bits (318), Expect = 1e-30
Identities = 114/400 (28%), Positives = 188/400 (47%), Gaps = 48/400 (12%)
Query: 204 NNGYVVSKDMFISNKYIRINLDSTRKITNLT-LSNNVFLALDVQFYYYASDKPTDTGRTD 262
NN + ++ I N+Y+ DS ++ +T + ++ +F+YY D
Sbjct: 564 NNRKKFNTNVEIQNEYLIAGFDSQGYLSYITEKATKKKRSIRQEFFYYEG-----IDSKD 618
Query: 263 KKNPGVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCAYSDYVSFVARLYTDLPYIEVD 322
+ G Y+FRP PI + + V ++ E+ S +VS RL YIE +
Sbjct: 619 DQPSGAYIFRPKTQQPIALTSKLALEVVPGAIINEVRQKVSPFVSQQIRLPRGKNYIEFE 678
Query: 323 WVVGPVPVE--DGWGKDVFLRYTTDLGNDGAFYTDANGRQTLKRLRNLRATYEPKSSKIX 380
W+VGP+P E + K+ RYTT++ + +TD+NGRQ ++R + ++E ++
Sbjct: 679 WIVGPIPKETKNPITKEFVTRYTTEVHSKNQSFTDSNGRQAMERFFDGATSFEYSDTEPI 738
Query: 381 XXXXXXXXXXXXVTDKPFQYPCFIFPGNLYPVTSKIYIEDEQKNLRFSIFNDRAQGGTSL 440
YP +TS YI+DE N +FS+ DRAQG +
Sbjct: 739 AGN---------------YYP----------ITSFGYIKDE--NAQFSVITDRAQGMVA- 770
Query: 441 TDGELDLMIIRRILTDE-TGTEMNLNETEYD-RGLIVRGKHILYATKMNHKPNMIYEKRL 498
+DG +++M+ RR D+ G E L+E D GL+ GKHI+ T + + + + L
Sbjct: 771 SDGVVEIMLHRRCFYDDHFGVEEALDEPGKDGAGLVAMGKHIVLFTDVKASTSQL--RPL 828
Query: 499 AKEISLEPKVLVSEYGGYGPYLKSKWLGETNEFSALKKKLPLGIHLLSIEQWNEATVLIR 558
A + +P + ++ P + E+S LK +LP+GIHLL++E+W++ + LIR
Sbjct: 829 AIDNFHQPVLAFNK----NP--EKFEFNRLLEYSGLKFELPIGIHLLTLEKWHKKSSLIR 882
Query: 559 LENYLEKSDAIRSGIKRVYLRDVFVNLRIRSIAECALGGN 598
EN + + IK +F N I S E LG N
Sbjct: 883 FENIYHGEEG--NSIKEFDPTHIFTNFDIVSFKELLLGAN 920
>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
protein F58H1.1b protein.
Length = 1145
Score = 43.6 bits (98), Expect = 5e-04
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 210 SKDMFISNKYIRINLDSTRKITN--LTLSNNVFLALDVQFYYYASDKPTDT-GRTDKKNP 266
S D + N + D + +L ++ + L+ F +Y + K ++ NP
Sbjct: 751 SGDFTVKNDKVEAEFDGENGMIKRATSLVDDKPIDLNSHFIHYGARKSKRKFANGNEDNP 810
Query: 267 -GVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCAYSDYVSFVAR--LYTDLPYIEVDW 323
G YLF P + I+ K VV+++ ++ + + LY LP+I++D
Sbjct: 811 AGAYLFLPDGEARELKKQSSDWILVKGEVVQKVFATPNNDLKILQTYTLYQGLPWIDLD- 869
Query: 324 VVGPVPVEDGWGKDVFLRYTTDLGNDGAFYTDANGRQTLKRLRNLR 369
V V ++ LR+++ + + F+TD NG Q +KR R +
Sbjct: 870 --NEVDVRSKENFELALRFSSSVNSGDEFFTDLNGMQMIKRRRQTK 913
Score = 43.6 bits (98), Expect = 5e-04
Identities = 19/50 (38%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 408 NLYPVTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDE 457
N YP+++ +YIED+ R SI + +A G +SL+ G++++M+ RR+ +D+
Sbjct: 919 NFYPMSAGVYIEDD--TTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDD 966
>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
protein F58H1.1a protein.
Length = 1143
Score = 43.6 bits (98), Expect = 5e-04
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 210 SKDMFISNKYIRINLDSTRKITN--LTLSNNVFLALDVQFYYYASDKPTDT-GRTDKKNP 266
S D + N + D + +L ++ + L+ F +Y + K ++ NP
Sbjct: 749 SGDFTVKNDKVEAEFDGENGMIKRATSLVDDKPIDLNSHFIHYGARKSKRKFANGNEDNP 808
Query: 267 -GVYLFRPVDSNPIPILDFIETIVYKTRVVEEIHCAYSDYVSFVAR--LYTDLPYIEVDW 323
G YLF P + I+ K VV+++ ++ + + LY LP+I++D
Sbjct: 809 AGAYLFLPDGEARELKKQSSDWILVKGEVVQKVFATPNNDLKILQTYTLYQGLPWIDLD- 867
Query: 324 VVGPVPVEDGWGKDVFLRYTTDLGNDGAFYTDANGRQTLKRLRNLR 369
V V ++ LR+++ + + F+TD NG Q +KR R +
Sbjct: 868 --NEVDVRSKENFELALRFSSSVNSGDEFFTDLNGMQMIKRRRQTK 911
Score = 43.6 bits (98), Expect = 5e-04
Identities = 19/50 (38%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 408 NLYPVTSKIYIEDEQKNLRFSIFNDRAQGGTSLTDGELDLMIIRRILTDE 457
N YP+++ +YIED+ R SI + +A G +SL+ G++++M+ RR+ +D+
Sbjct: 917 NFYPMSAGVYIEDD--TTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDD 964
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 438 TSLTDGEL--DLMIIRRILTDETGT--EMNLNETEYDRGLIVRGKHILYATKMNHKPNMI 493
++L DG + ++ +I+ D GT E + N+ EY + G + LYA N+ P
Sbjct: 132 SNLNDGTVGDEMEVIQHSTDDPNGTREEFDYNQIEYGNAVTPNGTYTLYAPDSNYAPYYQ 191
Query: 494 YEKRL 498
Y +
Sbjct: 192 YSNNM 196
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 438 TSLTDGEL--DLMIIRRILTDETGT--EMNLNETEYDRGLIVRGKHILYATKMNHKPNMI 493
++L DG + ++ +I+ D GT E + N+ EY + G + LYA N+ P
Sbjct: 132 SNLNDGTVGDEMEVIQHSTDDPNGTREEFDYNQIEYGNAVTPNGTYTLYAPDSNYAPYYQ 191
Query: 494 YEKRL 498
Y +
Sbjct: 192 YSNNM 196
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 446 DLMIIRRILTDETGT--EMNLNETEYDRGLIVRGKHILYATKMNHKPNMIYEKRL 498
++ +I+ D GT E + N+ EY + G + LYA N+ P Y +
Sbjct: 167 EMEVIQHSTDDPNGTREEFDYNQIEYGNAVTPNGTYTLYAPDSNYAPYYQYSNNM 221
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 30.3 bits (65), Expect = 4.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 446 DLMIIRRILTDETGT--EMNLNETEYDRGLIVRGKHILYATKMNHKPNMIYEKRL 498
++ +I+ D GT E + N+ EY + G + LYA N+ P Y +
Sbjct: 167 EMEVIQHSTDDPNGTREEFDYNQIEYGNAVTPNGTYTLYAPDSNYAPYYQYSNNM 221
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,424
Number of Sequences: 27539
Number of extensions: 662303
Number of successful extensions: 1277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 13
length of query: 673
length of database: 12,573,161
effective HSP length: 86
effective length of query: 587
effective length of database: 10,204,807
effective search space: 5990221709
effective search space used: 5990221709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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