GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001728-TA|BGIBMGA001728-PA|IPR011013|Galactose
mutarotase-like, IPR011682|Glycosyl hydrolases 38, C-terminal
         (673 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   1.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   4.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   8.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 603 DWSPLRWNKKTEFMRSFNEYYGRSNTSTVY 632
           D    +WN K   +R+ N+ Y   NT   Y
Sbjct: 378 DLDTKKWNNKISALRALNDLYNVKNTLDSY 407


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 73  LIRQVNPKMADD--NLINDEDYYYDDVTSTARTANRIVYGDFGRHKNY 118
           ++R+ +P+  +   N+I++  Y+  D  S  R    I  G++   KNY
Sbjct: 19  IVRENSPRNLEKSLNVIHEWKYFDYDFGSEERRQAAIQSGEYDHTKNY 66


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 303 SDYVSFVARLYTDLPYIEVDWVVGPVPVEDG 333
           ++Y ++  +LY ++ YIE   V  PVPV  G
Sbjct: 99  NNYNNYNKKLYYNINYIEQIPVPVPVPVYCG 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,545
Number of Sequences: 429
Number of extensions: 7932
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 673
length of database: 140,377
effective HSP length: 62
effective length of query: 611
effective length of database: 113,779
effective search space: 69518969
effective search space used: 69518969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)