GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001727-TA|BGIBMGA001727-PA|IPR000602|Glycoside
hydrolase, family 38
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    32   0.13 
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    31   0.29 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   6.2  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   8.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   8.3  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.3  

>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 60  VYGHSREIASLLAQMGFDGLFINPISFDDELD-RMRRKSME-FLW-RGSDDLGAETDIYT 116
           +YG ++EI     + GF  L I+ +    ELD R RRK ++   W +  D L AE   +T
Sbjct: 551 LYGLNKEIMLRAKKTGFSDLQISKLVGASELDVRARRKRLDVHPWVKKIDTLAAEFPAHT 610

Query: 117 HKLFDGY 123
           + L+  Y
Sbjct: 611 NYLYTSY 617


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 6   LRQGRLFIVGGAWGMVDEATTNYHAVIDQFTYSLRKLNATFLECGRPLMAWQADVYGHSR 65
           + Q +   +GG+W   D    N  ++I QF          F    R    W  D +G+S 
Sbjct: 351 VNQNKFIPIGGSWVEHDTNIPNGESLIRQFLLGQHFFEKEFGVRCRTF--WLPDTFGYSS 408

Query: 66  EIASLLAQMGFDGLFINPISFDD 88
           +I  +    G D      +S+++
Sbjct: 409 QIPQICRLCGMDRFLTQKLSWNN 431


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 203  PLPHVLPDVPLKWSFLYSEVNKKSYETGAN 232
            PLP  + +    W ++ +   KK+Y T A+
Sbjct: 1164 PLPENITNTEYGWGYILTRAEKKAYYTAAD 1193


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 141 ITSDSVFRNIDERVDLFIKSILHRQAPYYSTRNVMVMMGQRFGY-YDASIWFANVDKLIK 199
           +++D V+   DE   +  KS L+  +PY +++  + ++ Q + Y Y  S+    V +   
Sbjct: 147 VSTDEVYGEQDENASVDEKSKLNPTSPYAASKAAVDLIIQSYRYSYKISV---TVIRANN 203

Query: 200 AESPLPHVLPDVPLKWSFLYSEVNKKS 226
              P  +    +P+    L   +N+KS
Sbjct: 204 VYGPRQYEEKLIPMTLGKLKKFINQKS 230


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 226 SYETGANINLYYSTPA-CYLKAVYDSNPTLDTKQDDFFPMAYDKFSHATGLYTS 278
           S E    +NL  ST + C   + Y +N  L  K  D FP++ +  S ++G++T+
Sbjct: 93  SVELSNEVNLTSSTTSSCVKPSPYLTNCNLKNK--DTFPVSKNNCSLSSGIFTN 144


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 222 VNKKSYETGANINLYYSTPACYLKAVYDSNPTLDTKQDDFFPMAYDKFSHATGLYT 277
           V+K+S+   +  N++    +CY  +   SN TL  +  D      ++FS    L T
Sbjct: 90  VDKESFSKRSTTNMFDFNFSCYFGSDGHSNDTLCQQYIDVADSVGEQFSRVLNLNT 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,673
Number of Sequences: 5004
Number of extensions: 71391
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 6
length of query: 322
length of database: 2,362,478
effective HSP length: 73
effective length of query: 249
effective length of database: 1,997,186
effective search space: 497299314
effective search space used: 497299314
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)