GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001727-TA|BGIBMGA001727-PA|IPR000602|Glycoside
hydrolase, family 38
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)             180   2e-45
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)            145   4e-35
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        50   2e-06
SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)                 29   5.1  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  

>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score =  180 bits (437), Expect = 2e-45
 Identities = 87/201 (43%), Positives = 125/201 (62%), Gaps = 4/201 (1%)

Query: 1   MVYTLLRQGRLFIVGGAWGMVDEATTNYHAVIDQFTYSLRKLNATFLECGRPLMAWQADV 60
           +V  L+ Q RL  + G W M DEA T+Y+A+IDQ T  L+ +  TF    RP +AW  D 
Sbjct: 115 IVKKLVLQKRLEFINGGWCMNDEAATHYNAIIDQMTVGLKFIEETFGSDARPRIAWHIDP 174

Query: 61  YGHSREIASLLAQMGFDGLFINPISFDDELDRMRRKSMEFLWRG--SDDLGAETDIYTHK 118
           +GHS E ASL AQM FDG F   I +DD+  R++++ ME +WRG  S +LG  +DI+T  
Sbjct: 175 FGHSNEQASLFAQMSFDGFFFGRIDYDDKTLRLKQQRMEMVWRGSKSGNLGKNSDIFTGV 234

Query: 119 LFDGYWSPPGFCFGSYCDDPLLITSDSVF-RNIDERVDLFIKSILHRQAPYYSTRNVMVM 177
           L++GY  PPGFCF  +C D  +     ++  N+ +RV+ FIK +   Q   Y + N+M+ 
Sbjct: 235 LYNGYNPPPGFCFDQFCSDQPIQDDPRLYDENVKQRVEEFIK-LACEQGSQYKSNNIMMT 293

Query: 178 MGQRFGYYDASIWFANVDKLI 198
           MG  F Y +A++W+ N+DKLI
Sbjct: 294 MGSDFMYENANLWYKNLDKLI 314


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score =  145 bits (352), Expect = 4e-35
 Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 1   MVYTLLRQGRLFIVGGAWGMVDEATTNYHAVIDQFTYSLRKLNATFLECGRPLMAWQADV 60
           +V  L+ Q RL  + G W M DEA T+Y+A+IDQ T  L+ +  TF    RP +AW  D 
Sbjct: 115 IVKKLVLQKRLEFINGGWCMNDEAATHYNAIIDQMTVGLKFIEETFGSDARPRIAWHIDP 174

Query: 61  YGHSREIASLLAQMGFDGLFINPISFDDELDRMRRKSMEFLWRG--SDDLGAETDIYTHK 118
           +GHS E ASL AQM FDG F   I +DD+  R++++ ME +WRG  S +LG  +DI+T  
Sbjct: 175 FGHSNEQASLFAQMSFDGFFFGRIDYDDKTLRLKQQRMEMVWRGSKSGNLGKNSDIFTGV 234

Query: 119 LFDGYWSPPGFCFGSYCDDPLLITSDSVFRNIDERVDLF 157
           L++GY  PPGFCF  +C D  +     ++   D RV  F
Sbjct: 235 LYNGYNPPPGFCFDQFCSDQPIQDDPRLYDENDSRVRAF 273



 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 32/75 (42%), Positives = 45/75 (60%)

Query: 228 ETGANINLYYSTPACYLKAVYDSNPTLDTKQDDFFPMAYDKFSHATGLYTSRPTIKYMAR 287
           E  + +  +YSTP  YL+A++ +N T   K DDFFP A     + TG +TSRP +K  +R
Sbjct: 265 ENDSRVRAFYSTPTTYLEALHAANLTWGLKTDDFFPYADCPHCYWTGYFTSRPALKRYSR 324

Query: 288 EGHVYLQMAKQLQVL 302
             +  LQ  KQL+VL
Sbjct: 325 LNNNLLQACKQLEVL 339


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 51  RPLMAWQADVYGHSREIASLLAQMGFDGLFINPISFDDELDRMRRKSMEFLWRGSDDLGA 110
           +P+  W  D +GH+  +  LL ++GF  + I    +  +    R  ++EF+WR   D G+
Sbjct: 5   KPVSGWAIDPFGHTSTMPYLLRRIGFHSMLIQRTHYQVKKHLARETNLEFMWRQIWDHGS 64

Query: 111 ETDIYTHKL 119
            TDI  H L
Sbjct: 65  STDILCHTL 73


>SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)
          Length = 874

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 169 YSTRNVMVMMGQRFGYYDASIWFANVDKLIKAESPLPHVLPDVPLKWSFLYSEVNKKSYE 228
           Y++R  +   G+ +   +     A +D L +A  PL H  PD P    F  SE  K   E
Sbjct: 490 YASR-ALTQTGRNYAQIEKEC-LAIIDTLSRASLPLDHARPDTPAHQIFQISEEEKMREE 547


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 224 KKSYETGANINLYYSTPACYLKAVYDSNPTLDT 256
           K+ + T  ++N YYS P  Y+  ++D N  L++
Sbjct: 492 KEWHMTPVDVNAYYSLPNNYIGRLFDKNGNLES 524


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 128 GFCFGSYCDDPLLITSDSVFRNIDER--VDLFI 158
           GF  G  C+  L+IT D + R +D R  VDL I
Sbjct: 278 GFRKGRSCETQLIITVDDIARGLDNRSQVDLLI 310


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 79  LFINPISFDDELDRMRRKSMEFLWRGSD-DLGAETDIYTHKLFDGYWSPPGFCFGSYCDD 137
           L +  +S D  + +  +  + FLWRG+D D  ++T      +F    SP   C  SYC  
Sbjct: 452 LHVIAVSADMRVIKRDKAYLRFLWRGADRDRPSDTYQMEAIIFGAKCSPT--C-ASYCLR 508

Query: 138 PLLITSDSVFRNI--DERVDLFIKSI 161
              I ++ +F  +  D  +D  +KS+
Sbjct: 509 QTAIDNEHLFEAVLRDFYMDDLVKSV 534


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 128 GFCFGSYCDDPLLITSDSVFRNIDER--VDLFI 158
           GF  G  C+  L+IT D + R +D R  VDL I
Sbjct: 346 GFRKGRSCETQLIITVDDIARGLDNRSQVDLLI 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.139    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,569
Number of Sequences: 59808
Number of extensions: 479125
Number of successful extensions: 1259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 13
length of query: 322
length of database: 16,821,457
effective HSP length: 82
effective length of query: 240
effective length of database: 11,917,201
effective search space: 2860128240
effective search space used: 2860128240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)