Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001726-TA|BGIBMGA001726-PA|IPR000573|Aconitate
hydratase, C-terminal
         (284 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)             407   e-114
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)             31   1.1  
SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.4  
SB_24096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     30   2.5  
SB_41602| Best HMM Match : Kelch_1 (HMM E-Value=2e-33)                 29   5.7  

>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score =  407 bits (1001), Expect = e-114
 Identities = 189/284 (66%), Positives = 223/284 (78%)

Query: 1   IPVSSVQVYARIEQGSAAWQALDVPRGRLYSWDANSTYIKKPPFFDGMTKELPAATSVRG 60
           IP    +VY++I+ G+A W +LD P   LY WD  STYIK PPFF+ MT+ELP    ++ 
Sbjct: 626 IPSMFKEVYSKIQTGNAQWNSLDAPDSLLYPWDEKSTYIKSPPFFEAMTRELPEIKGIQN 685

Query: 61  ARCLLLLGDSVTTDHISPAGSIARNSPAARYLAQRGLTAREFNSYGSRRGNDAVMSRGTF 120
           A  LL LGDSVTTDHISPAGSI+R SPAARYL+ RGLT REFNSYGSRRGNDAVM+RGTF
Sbjct: 686 AAVLLNLGDSVTTDHISPAGSISRTSPAARYLSDRGLTPREFNSYGSRRGNDAVMARGTF 745

Query: 121 ANIRIVNKMAPAPGPKTTHHPSGDVMDIFDAAERYASEDVPLIAIVGKDYGSGSSRDWAA 180
           ANIR+VNK      PKT H PSGD MDIFDAAERY  E    I + GKDYGSGSSRDWAA
Sbjct: 746 ANIRLVNKFIGKASPKTKHFPSGDTMDIFDAAERYQKEGRTTIILAGKDYGSGSSRDWAA 805

Query: 181 KGPYLLGIKAVIAESFERIHRSNLVGMGLLPLQFLPGESAATLGLTGAERYDIILPPALA 240
           KGP++ G++AV+A+S+ERIHRSNLVGMG++PLQFL GESA TLGLTG E Y+I LP  L+
Sbjct: 806 KGPWMQGVRAVVAQSYERIHRSNLVGMGIIPLQFLEGESAETLGLTGQEAYNINLPQELS 865

Query: 241 PGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNGGILNYMVRKML 284
            GQ   V + +G SF+  VRFDT+V+LTYFK+GGILNYM+R+ML
Sbjct: 866 TGQVIDVSLSDGRSFKAKVRFDTDVELTYFKHGGILNYMIRRML 909


>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
          Length = 266

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 29  LYSWDANSTYIKKPPFFDG 47
           LY W   STYI++PP+++G
Sbjct: 244 LYDWRPMSTYIRRPPYWEG 262


>SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 248 QVDNGTSFQVVVRFDTEVDLTYFKNGGILNYMVRKM 283
           +VDNG  + +  +  TE  LT +K GG  NY+V++M
Sbjct: 160 KVDNGEGYIIGQKLGTEDRLTEYKRGG-GNYLVKRM 194


>SB_24096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 66  LLGDSVTTDHISPAGSIARNSPAARY--LAQRGLTAREFNSYGSRRGNDAVMSRGTFANI 123
           +LGD  + DH +  G+++R+SPA     LA R  +A   N     R N  ++S    +  
Sbjct: 340 VLGDLASRDHSTKRGNVSRDSPACVLGDLASRDHSAERGN---KSRDNPVIVSSQLASRD 396

Query: 124 RIV--NKMAPAPGPKTTHHPSG 143
            ++   +    P  +TT   SG
Sbjct: 397 TVICDQESRDQPNAQTTEQVSG 418


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 41  KPPFFDGMTKELPAATSVRGARCLLLLGDSVTTDHISPAGSIARNSPAARYLAQRGLTAR 100
           KPP     +K    A S    R       S  T  +SP GSIA +S     +++   + +
Sbjct: 47  KPPATPSSSKTTSTARSTVKPRGTTSAASSAATGLVSPRGSIAGSSQVQPRVSRENSSTK 106

Query: 101 EFNSYGSRRGNDAVMSRGTFANIRIVNKMAP--APGPKTTH-HPSGDVMDIFDAAERYAS 157
              SY     + ++ S G+   +R  +  +     G  ++   PS +++ +F   +R   
Sbjct: 107 --LSYRRETSSSSLRSSGSETQLRRESSQSSIVRRGSSSSQPTPSDELLKLFQVGDRVLV 164

Query: 158 EDVP--LIAIVGKDYGSGSSRDWA 179
            +    +IA +G+     +  DWA
Sbjct: 165 NNTKPGVIAFLGET--KFAKGDWA 186


>SB_41602| Best HMM Match : Kelch_1 (HMM E-Value=2e-33)
          Length = 227

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 201 RSNLVGMGLLP-LQFLPGESAATLGLTGAERYDIIL 235
           R+  VG+ L   L  L GES   + LT  ERYDI L
Sbjct: 102 RAGAVGLALNDKLYVLGGESEVRVALTSCERYDIDL 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,475,075
Number of Sequences: 59808
Number of extensions: 394609
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 16,821,457
effective HSP length: 81
effective length of query: 203
effective length of database: 11,977,009
effective search space: 2431332827
effective search space used: 2431332827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)