GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001726-TA|BGIBMGA001726-PA|IPR000573|Aconitate
hydratase, C-terminal
         (284 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.64 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 79   AGSIARNSPAARYLAQRGLTAREFNSYGSRRGNDAVMSR--GTFANIRIVNKMAPAPGPK 136
            AGS  RNS A+   + R  T R  N      G+   +S    + +     + +AP+ G K
Sbjct: 927  AGSPCRNS-ASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDSLSGNNTGDALAPSGGKK 985

Query: 137  TTHHPSGDVMDIFDAAERYAS 157
             + HP   +  + D  E + +
Sbjct: 986  GSSHPLAALQKLCDKTETHTN 1006


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 83  ARNSPAARYLAQRGLTAREFNSYGSRRGND 112
           +R SP+ ++L + GL   + NS     G+D
Sbjct: 159 SRTSPSGQHLQELGLRLEDANSDEQDDGDD 188


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 83  ARNSPAARYLAQRGLTAREFNSYGSRRGND 112
           +R SP+ ++L + GL   + NS     G+D
Sbjct: 159 SRTSPSGQHLQELGLRLEDANSDEQDDGDD 188


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 83  ARNSPAARYLAQRGLTAREFNSYGSRRGND 112
           +R SP+ ++L + GL   + NS     G+D
Sbjct: 159 SRTSPSGQHLQELGLRLEDANSDEQDDGDD 188


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,059
Number of Sequences: 317
Number of extensions: 2776
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 114,650
effective HSP length: 56
effective length of query: 228
effective length of database: 96,898
effective search space: 22092744
effective search space used: 22092744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)