Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001726-TA|BGIBMGA001726-PA|IPR000573|Aconitate
hydratase, C-terminal
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 351 5e-97
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 341 5e-94
02_05_0174 - 26486955-26487728 35 0.065
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 29 4.3
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367... 29 4.3
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 28 9.8
11_04_0422 + 17494795-17494797,17494927-17495421,17496214-17497104 28 9.8
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 28 9.8
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 351 bits (862), Expect = 5e-97
Identities = 170/287 (59%), Positives = 204/287 (71%), Gaps = 4/287 (1%)
Query: 1 IPVSSVQVYARIEQGSAAWQALDVPRGRLYSWDANSTYIKKPPFFDGMTKELPAATSVRG 60
+P Y I +G+ W L VP LYSWD NSTYI +PP+F MT P V+
Sbjct: 613 LPDMFKSTYEAITKGNPMWNQLTVPEASLYSWDPNSTYIHEPPYFKDMTMSPPGPHGVKN 672
Query: 61 ARCLLLLGDSVTTDHISPAGSIARNSPAARYLAQRGLTAREFNSYGSRRGNDAVMSRGTF 120
A CLL GDS+TTDHISPAGSI ++SPAA+YL +RG+ ++FNSYGSRRGND VM+RGTF
Sbjct: 673 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTF 732
Query: 121 ANIRIVNKMAPAP-GPKTTHHPSGDVMDIFDAAERYASEDVPLIAIVGKDYGSGSSRDWA 179
ANIRIVNK GPKT H P+G+ + +FDAA +Y SE I + G +YGSGSSRDWA
Sbjct: 733 ANIRIVNKFLNGEVGPKTVHVPTGEKLYVFDAALKYKSEGHDTIVLAGAEYGSGSSRDWA 792
Query: 180 AKGPYLLGIKAVIAESFERIHRSNLVGMGLLPLQFLPGESAATLGLTGAERYDIILP--- 236
AKGP LLG+KAVIA+SFERIHRSNLVGMG++PL F GE A +LGLTG ERY I LP
Sbjct: 793 AKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERYTIDLPTNV 852
Query: 237 PALAPGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNGGILNYMVRKM 283
+ PGQ TV DNG SF +RFDTEV+L YF +GGIL Y++R +
Sbjct: 853 SEIRPGQDITVTTDNGKSFTCTLRFDTEVELAYFNHGGILPYVIRNL 899
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 341 bits (837), Expect = 5e-94
Identities = 164/287 (57%), Positives = 199/287 (69%), Gaps = 4/287 (1%)
Query: 1 IPVSSVQVYARIEQGSAAWQALDVPRGRLYSWDANSTYIKKPPFFDGMTKELPAATSVRG 60
+P Y I +G+ W L V LY WD STYI +PP+F MT P V+
Sbjct: 706 LPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTSTYIHEPPYFKDMTMSPPGPRPVKD 765
Query: 61 ARCLLLLGDSVTTDHISPAGSIARNSPAARYLAQRGLTAREFNSYGSRRGNDAVMSRGTF 120
A CLL GDS+TTDHISPAGSI +SPAARYL +RG+ ++FNSYGSRRGND +M+RGTF
Sbjct: 766 AYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGVERKDFNSYGSRRGNDEIMARGTF 825
Query: 121 ANIRIVNKMAPAP-GPKTTHHPSGDVMDIFDAAERYASEDVPLIAIVGKDYGSGSSRDWA 179
ANIR+VNK GPKT H PSG+ + +FDAA +Y +E I + G +YGSGSSRDWA
Sbjct: 826 ANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEGHDTIILAGAEYGSGSSRDWA 885
Query: 180 AKGPYLLGIKAVIAESFERIHRSNLVGMGLLPLQFLPGESAATLGLTGAERYDIILP--- 236
AKGP L G+KAVIA+SFERIHRSNL GMG++PL F GE A TLGLTG ER+ + LP
Sbjct: 886 AKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTLGLTGHERFTVHLPANV 945
Query: 237 PALAPGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNGGILNYMVRKM 283
+ PGQ TV DNG SF +RFDTEV+L Y+ NGGIL Y++RK+
Sbjct: 946 SEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYYDNGGILPYVIRKI 992
>02_05_0174 - 26486955-26487728
Length = 257
Score = 35.1 bits (77), Expect = 0.065
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 163 IAIVGKDYGSGSSRDWAAKGPYLLGIKAVIAESFERIHRSNLVGMG-LLPLQ 213
+ I G ++G GSSR+ A G +AV+AE + RI N V G + PL+
Sbjct: 140 VIIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLE 191
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 232 DIILPPALAPGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNG 273
D+ L PAL A + + G SF+VV V+ TYF+ G
Sbjct: 718 DLPLAPALFGEVVARLSLSCGLSFEVVEEILKAVEDTYFRKG 759
>01_01_0499 -
3675303-3675484,3676888-3676982,3677046-3677096,
3677191-3677270,3677423-3677593,3677836-3677937,
3678092-3678244,3678392-3678523,3678702-3678788,
3678987-3679126,3679246-3679660
Length = 535
Score = 29.1 bits (62), Expect = 4.3
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 54 AATSVRGARCLLLL-GDSVTTDHISPAGS-------IARNSPAARYLAQRGLTAREFNSY 105
AA + R C LL G + D +S +G+ AR+S + LA+R ++ F++
Sbjct: 31 AAANGRTHVCRFLLEGLGLPVDALSASGAPPSRPAAAARSSHVSSMLAERLISCFVFDA- 89
Query: 106 GSRRGNDAVMSRGTFANIRIVNKMAPAPGPKTTHHPSGDVMDIFDAAERYASEDVPLIAI 165
+ G ++ TF + + +T P+G + AA E L+ +
Sbjct: 90 AAHAGETPLLLAATFGHTSTAAYLLDRGADPSTPDPNGGDTPLHWAAYNGDRELAKLLLL 149
Query: 166 VGKDYGSGSSRDWAAKGPYLLGIKAVIA 193
G D G+ + R A G AV++
Sbjct: 150 RGADVGAANPRGTALHVAAARGHAAVVS 177
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 160 VPLIAIVGKDYGSGSSRDWAAKGPYLLGIKAVI-----AESFERIHRSNLVGMGLLPLQ 213
V L AI GKD G SSR+ A + P+ + I+ + + E +H + G+ L+P +
Sbjct: 373 VVLDAIRGKDAGDPSSREVAIEDPFHVDIRQLTVGYLDSAEMEVVHVLSAKGVKLVPFK 431
>11_04_0422 + 17494795-17494797,17494927-17495421,17496214-17497104
Length = 462
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 96 GLTAREF-NSYGSRRGNDAVMSRGTFANIRIVNKMAPAPGPKTTHHPSGDVMDIFDAAER 154
GL A EF NS+ A ++ F + ++ P P HH ++ D+ D A
Sbjct: 188 GLGAMEFVNSWAETARGAAELTVPPFLDRTLLRARDP-PVISFEHHEFEEIPDVSDTAAL 246
Query: 155 YASEDV 160
YA +D+
Sbjct: 247 YADQDL 252
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 163 IAIVGKDYGSGSSRDWAAKGPYLLGIKAVIAESFERIHRSNLVGMGLLPL 212
+ + GK G AAK G+ E E+IH S+LVG+ PL
Sbjct: 258 VKVTGKKPGPSKGSSGAAKN----GLDTESYELLEKIHGSSLVGLRYTPL 303
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,943,534
Number of Sequences: 37544
Number of extensions: 399291
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 10
length of query: 284
length of database: 14,793,348
effective HSP length: 81
effective length of query: 203
effective length of database: 11,752,284
effective search space: 2385713652
effective search space used: 2385713652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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