GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001726-TA|BGIBMGA001726-PA|IPR000573|Aconitate
hydratase, C-terminal
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.027
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 90   RYLAQRGLTAREFNSYGSRRGNDAVMSRGTFANIRIVNKMAPAPGPKTTHHPSGDVMDIF 149
            +Y +Q G     ++ YGSR G+    S G+  NI +     P P P   H  +    +  
Sbjct: 1819 QYGSQYGQYGAPYDHYGSR-GSVGRRSVGSARNIPVSGSPEPPPPPPRNHDQNNSSFNDS 1877

Query: 150  DAAERYASEDVPLIAIVGKDYG 171
              +   +  +     +V ++YG
Sbjct: 1878 KESNEISEAECDRDQLVNRNYG 1899


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 236 PPALAPGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNGGI 275
           P   AP +  TV+  +  +    V  DT V +T+ K G I
Sbjct: 808 PYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKI 847


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 236 PPALAPGQTATVQVDNGTSFQVVVRFDTEVDLTYFKNGGI 275
           P   AP +  TV+  +  +    V  DT V +T+ K G I
Sbjct: 804 PYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKI 843


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 52  LPAATSVRGARCLLLLGDSVTTDHIS 77
           L  A +VRG +C++++ + ++ + IS
Sbjct: 113 LAMAAAVRGYKCIIVMPEKMSDEKIS 138


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,981
Number of Sequences: 429
Number of extensions: 3286
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)