Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001725-TA|BGIBMGA001725-PA|IPR001030|Aconitate
hydratase, N-terminal
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 478 e-135
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 464 e-131
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130... 58 1e-08
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 31 1.3
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 30 4.0
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 29 5.3
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 7.0
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 478 bits (1178), Expect = e-135
Identities = 234/402 (58%), Positives = 296/402 (73%), Gaps = 6/402 (1%)
Query: 2 AGSTNPYQKLLKTI-EINGSTY-TYYDVSALG-PKYDRLPFSIRVLLESCVRNCDNFQVL 58
A + +P++ +L T+ + G Y +Y + AL P+ D+LP+SIR+LLES +RNCDNFQV
Sbjct: 5 AAAEHPFKNILTTLPKPGGGEYGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVN 64
Query: 59 EKDVSNVLDWESKQGNEESVEIAFKPARVILQDLTGVPAVVDFAAMRDAVKDLGGDPDRI 118
+ DV ++DWE+ + + EI FKPARV+LQD TGVPAVVD AAMRDA+ LG D ++I
Sbjct: 65 QNDVEKIIDWENT--SPKLAEIPFKPARVLLQDFTGVPAVVDLAAMRDAMAKLGSDANKI 122
Query: 119 NPICPADLVIDHSVQVDFARTPDALNKNQDLEFVRNKERFQFLKWGAQAFDNMLIVPPGS 178
NP+ P DLVIDHSVQVD AR+P+A+ N +LEF RN ERF FLKWG+ AF NML+VPPGS
Sbjct: 123 NPLVPVDLVIDHSVQVDVARSPNAVQSNMELEFKRNNERFGFLKWGSTAFHNMLVVPPGS 182
Query: 179 GIVHQVNLEYLARVVF-TGPLLHPDSVVGTDSHTTMINXXXXXXXXXXXIEAEAVMLGQA 237
GIVHQVNLEYL RVVF T +++PDSVVGTDSHTTMI+ IEAEA MLGQ
Sbjct: 183 GIVHQVNLEYLGRVVFNTDGIMYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQP 242
Query: 238 ISMLLPKVVGYKLVGELNPLATSTDLVLTITKHLRSLGVVGKFVEFFGPGVGALSIADRA 297
+SM+LP VVG+KL G+L T+TDLVLT+T+ LR GVVGKFVEF+G G+G LS+ADRA
Sbjct: 243 MSMVLPGVVGFKLTGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGKLSLADRA 302
Query: 298 TVANMCPEFGATLAHFPVDARSLEYLHQTNRPKEKIDVIESYLRATKQFRDYTNPEQDPV 357
T+ANM PE+GAT+ FPVD +L+YL T R E + +IE+YLRA K F DY P+ + V
Sbjct: 303 TIANMSPEYGATMGFFPVDHVTLDYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQTERV 362
Query: 358 FSEVVELDLGDVVTSVSGPKRPQDRVSVAIMKKDFQDCLTNK 399
+S +ELDL +V +SGPKRP DRV + MK D+ CL N+
Sbjct: 363 YSSYLELDLNEVEPCISGPKRPHDRVLLKEMKSDWHSCLDNR 404
>03_01_0261 -
2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 464 bits (1145), Expect = e-131
Identities = 237/411 (57%), Positives = 292/411 (71%), Gaps = 16/411 (3%)
Query: 2 AGSTNPYQKLLKTIEINGSTYT---YYDVSALG-PKYDRLPFSIRVLLESCVRNCDNFQV 57
A + N Y ++L + G YY + AL P+ +RLP+SIR+LLES +RNCD FQV
Sbjct: 88 AAAKNSYDEILTGLAKPGGGAEFGKYYSLPALSDPRIERLPYSIRILLESAIRNCDEFQV 147
Query: 58 LEKDVSNVLDWESKQGNEESVEIAFKPARVILQDLTGVPAVVDFAAMRDAVKDLGGDPDR 117
KDV +LDWE+ + VEI FKPARV+LQD TGVPAVVD A MRDA+ LG DP++
Sbjct: 148 TGKDVEKILDWENSAPKQ--VEIPFKPARVLLQDFTGVPAVVDLACMRDAMSKLGSDPNK 205
Query: 118 INPICPADLVIDHSVQVDFARTPDALNKNQDLEFVRNKERFQFLKWGAQAFDNMLIVPPG 177
INP+ P DLVIDHSVQVD AR+ +A+ N +LEF RNKERF FLKWG+ AF NML+VPPG
Sbjct: 206 INPLVPVDLVIDHSVQVDVARSENAVQANMELEFHRNKERFGFLKWGSTAFRNMLVVPPG 265
Query: 178 SGIVHQVNLEYLARVVFT-GPLLHPDSVVGTDSHTTMINXXXXXXXXXXXIEAEAVMLGQ 236
SGIVHQVNLEYLARVVF G +L+PDSVVGTDSHTTMI+ IEAEA MLGQ
Sbjct: 266 SGIVHQVNLEYLARVVFNNGGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQ 325
Query: 237 AISMLLPKVVGYKLVGELNPLATSTDLVLTITKHLRSLGVVGKFVEFFGPGVGALSIADR 296
+SM+LP VVG+KL G+L T+TDLVLT+T+ LR GVVGKFVEF+G G+ LS+ADR
Sbjct: 326 PMSMVLPGVVGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLADR 385
Query: 297 ATVANMCPEFGATLAHFPVDARSLEYLHQTNRPKEKIDVIESYLRATKQFRDYTNPEQDP 356
AT+ANM PE+GAT+ FPVD ++L+YL T R + + +IESYLRA K F DY PE +
Sbjct: 386 ATIANMSPEYGATMGFFPVDGKTLDYLKLTGRSDDTVAMIESYLRANKMFVDYNQPEAER 445
Query: 357 VFSEVVELDLGDVVTSVSGPK---------RPQDRVSVAIMKKDFQDCLTN 398
V+S +EL+L +V +SGPK RP DRV++ MK D+ CL N
Sbjct: 446 VYSSYLELNLEEVEPCLSGPKRYKLKNPLHRPHDRVTLKNMKSDWLSCLDN 496
>02_01_0193 -
1305109-1305249,1305677-1305835,1305922-1305969,
1306621-1306752,1306842-1306896,1307600-1307649,
1307822-1307917,1308001-1308078,1308169-1308243,
1308648-1308764,1308843-1308911,1309035-1309358,
1309534-1309587,1309688-1309747
Length = 485
Score = 58.0 bits (134), Expect = 1e-08
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 204 VVGTDSHTTMINXXXXXXXXXXXIEAEAVM-LGQAISMLLPKVVGYKLVGELNPLATSTD 262
++GTDSHT +A VM G+A+ + +P + + L GE+ P + D
Sbjct: 171 LLGTDSHTCNAGAFGQFATGIGNTDAGFVMGTGKAL-LKVPPTIRFVLDGEMPPYLLAKD 229
Query: 263 LVLTITKHLRSLGVVGKFVEFFGPGVGALSIADRATVANMCPEFGATLAHFPVDARSLEY 322
L+L I + G K +EF G V +L++ +R T+ NM E G P D + Y
Sbjct: 230 LILQIIGEISVSGATYKSMEFVGSTVESLNMEERMTLCNMVIEAGGKNGVVPADQTTFNY 289
Query: 323 L 323
L
Sbjct: 290 L 290
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 31.5 bits (68), Expect = 1.3
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 287 GVGALSIADRATVANMCPEFG-ATLAHFPVDARSLEYLHQTNRPKEKIDVIE------SY 339
G+GALS +++A P+ G T PV + L + + K+ +
Sbjct: 327 GLGALSSFAVSSIAAFVPKLGWKTFFEEPVMLVAFVLLGKNLEQRAKLKATSDMTGLLNI 386
Query: 340 LRATKQFRDYTNPEQDPVFSEVV--ELDLGDVVTSVSGPKRPQDRVSVAIMKKDFQDCLT 397
L + + +PEQ F+EV L +GD + + G + P D V + + LT
Sbjct: 387 LPSKARLMVDNDPEQSS-FTEVPCDTLSVGDYIVVLPGDRVPADGVVKSGRSTVDESSLT 445
Query: 398 NKPVPIAILSGVQ 410
+P+P+ ++G +
Sbjct: 446 GEPMPVTKIAGTE 458
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 150 EFVRNKERFQF-LKWGA--QAFDNMLIVPPGSGIVHQVNLEYLARVVFTGPLL 199
+F+ N R F +++G + D++L PGSG+VH+ +L+Y F G LL
Sbjct: 719 DFMENITRAAFDVQYGLFKETADHLLYPNPGSGLVHEQHLQYFH---FLGSLL 768
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 29.5 bits (63), Expect = 5.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 372 SVSGPKRPQDRVSVAIMKKDFQDCLTNKPVPIAILSGVQ 410
S+SG + D V+V + K F + LT KPV + + G++
Sbjct: 42 SLSGENKDNDPVTVPVNPKPFLNNLTGKPVIVKLKWGME 80
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.1 bits (62), Expect = 7.0
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 308 ATLAHFPVDARSLEYLHQTNRPKEKIDVIESYLRATKQFRDYTNPEQDPVFSEVVELDLG 367
ATL P + E L QTN P E+ ES A K ++ N E S++
Sbjct: 752 ATLTEKPSKEDAAEKLPQTNEPSEQPH--ESEETAEKPLQNEANAESTTKQSDLSLEKPP 809
Query: 368 DVVTSVSGPKRPQDRVSVAIMKKDFQ 393
V +V P P+ + + D Q
Sbjct: 810 QVDANVGNPTEPESDATSGVNSSDAQ 835
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,723,958
Number of Sequences: 37544
Number of extensions: 473153
Number of successful extensions: 1091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 7
length of query: 419
length of database: 14,793,348
effective HSP length: 84
effective length of query: 335
effective length of database: 11,639,652
effective search space: 3899283420
effective search space used: 3899283420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -