Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001725-TA|BGIBMGA001725-PA|IPR001030|Aconitate
hydratase, N-terminal
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.) 194 8e-50
SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16) 65 9e-11
SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) 39 0.009
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 31 2.3
SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_16553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 29 9.3
>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 194 bits (474), Expect = 8e-50
Identities = 91/133 (68%), Positives = 107/133 (80%)
Query: 267 ITKHLRSLGVVGKFVEFFGPGVGALSIADRATVANMCPEFGATLAHFPVDARSLEYLHQT 326
+ + LR GVVGKFVEFFGPGV LSIADRAT+ANMCPE+GAT+ FPVD +S+ YL QT
Sbjct: 285 VHQDLRQRGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATVGFFPVDDKSMLYLRQT 344
Query: 327 NRPKEKIDVIESYLRATKQFRDYTNPEQDPVFSEVVELDLGDVVTSVSGPKRPQDRVSVA 386
R + KI +IE+YL+A+K FRDY +P DPVFSEVVELDL VV S+SGPKRP DRVSV+
Sbjct: 345 GRDESKIAMIEAYLKASKLFRDYNDPSSDPVFSEVVELDLSTVVPSLSGPKRPHDRVSVS 404
Query: 387 IMKKDFQDCLTNK 399
MK+DFQ CL NK
Sbjct: 405 GMKEDFQQCLNNK 417
Score = 121 bits (291), Expect = 1e-27
Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 9/190 (4%)
Query: 1 MAGSTNPYQKLLKTIEINGSTYTYYDVSALGPK-YDRLPFSIRVLLESCVRNCDNFQVLE 59
MA +PY+ +++I +N Y+D S LG + + RLPFSIR+LLES VRNCDNFQV +
Sbjct: 100 MAHDNSPYKHCIQSINVNSQELKYFDASKLGEEAFGRLPFSIRILLESAVRNCDNFQVHQ 159
Query: 60 KDVSNVLDWESKQGNEESVEIAFKPARVILQDLTGVPAVVDFAAMRDAVKDLGGDPDRIN 119
KDV N+LDWE Q E++VEI F P+RV + + V+ + + + +
Sbjct: 160 KDVENILDWEKNQ--EQAVEIPFTPSRVCIAVMYTTIIVIIIINISIVTIIITNNISIVT 217
Query: 120 PICPADLVIDHSVQVDFAR------TPDALNKNQDLEFVRNKERFQFLKWGAQAFDNMLI 173
I ++I+ S+ T N + + F +WG++A NM I
Sbjct: 218 IITIIIIIINISIVTIIITNNISIVTIITTTINISIIIINVMPPSPFRRWGSKALQNMTI 277
Query: 174 VPPGSGIVHQ 183
+PPGSGIVHQ
Sbjct: 278 IPPGSGIVHQ 287
>SB_17736| Best HMM Match : Aconitase (HMM E-Value=5.2e-16)
Length = 391
Score = 65.3 bits (152), Expect = 9e-11
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 262 DLVLTITKHLRSLGVVGKFVEFFGPGVGALSIADRATVANMCPEFGATLAHFPVDARSLE 321
D++L + L G G VE+FGPGV ++S T+ NM E GAT + FP + R
Sbjct: 34 DVILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATTSIFPYNHRMEA 93
Query: 322 YLHQTNRPKEKIDVIESYLRATKQFRDYTNPEQDPVFSEVVELDLGDVVTSVSGPKRP 379
YL T R K V E Q++ + ++ + +V+E+DL + V+GP P
Sbjct: 94 YLRATERSK----VAE----LANQYKHLLSSDEGADYDQVIEIDLSVLEPHVNGPFTP 143
>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
Length = 193
Score = 38.7 bits (86), Expect = 0.009
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 123 PADLVIDHSVQVDFARTPDALNKNQDLEFVRNKERFQFLKWGAQAFDNMLIVPPGSGIVH 182
P+ + DH ++ + D L K +D+ NKE + FL + + + PGSGI+H
Sbjct: 110 PSTIHCDHLIEAKDGGSQD-LAKAKDI----NKEVYNFLATASAKY-GVGFWKPGSGIIH 163
Query: 183 QVNLEYLARVVFTGPLLHPDSVVGTDSHT 211
Q+ LE A F G +L +GTDSHT
Sbjct: 164 QIVLENYA---FPGVML-----IGTDSHT 184
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/77 (23%), Positives = 29/77 (37%)
Query: 20 STYTYYDVSALGPKYDRLPFSIRVLLESCVRNCDNFQVLEKDVSNVLDWESKQGNEESVE 79
ST+ +Y V +L D+LP S R+ ++ R C N W S+
Sbjct: 167 STFIFYKVISLRVFRDQLPLSTRLFSDNLFRKCVNHVQKRASSLQYAHWGPAPDLPSSIT 226
Query: 80 IAFKPARVILQDLTGVP 96
+ P + + T P
Sbjct: 227 LTISPQKTATKPSTFQP 243
>SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.9 bits (64), Expect = 4.0
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 343 TKQFRDYTNPEQDPVFSEVVELDLGDV-VTSVSGPKRPQDRVSVAIMKKDFQDCLTNK-P 400
T++ ++ T P Q P F +ELDL D T KR Q +++ + C K
Sbjct: 192 TRRVKEVTKPFQAPTFLSFIELDLMDFRNTPCKCSKRHQWVLNIIDHHSKYVTCWPLKGK 251
Query: 401 VPIAILSGVQEHVLDFPY 418
+ +L G+Q + F +
Sbjct: 252 NAVEVLQGLQNYCYSFGF 269
>SB_16553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 921
Score = 29.1 bits (62), Expect = 7.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 346 FRDYTNPEQDPVFSEVVELDLG 367
+RD T P P+FSE++ LD G
Sbjct: 325 YRDNTRPANLPLFSEIITLDTG 346
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 343 TKQFRDYTNPEQDPVFSEVVELDLGDV-VTSVSGPKRPQDRVSVAIMKKDFQDCLTNK-P 400
T++ ++ T P Q P F +ELDL D T KR Q +++ + C K
Sbjct: 146 TRRVKEVTKPFQAPTFLSFIELDLMDFRNTQCKCSKRHQWVLNIIDHHSKYVTCWPLKGK 205
Query: 401 VPIAILSGVQEHVLDFPY 418
+ +L G++ + F +
Sbjct: 206 NAVEVLQGLKNYCYSFGF 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,355
Number of Sequences: 59808
Number of extensions: 532110
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 9
length of query: 419
length of database: 16,821,457
effective HSP length: 84
effective length of query: 335
effective length of database: 11,797,585
effective search space: 3952190975
effective search space used: 3952190975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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