GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001724-TA|BGIBMGA001724-PA|undefined
         (468 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   6.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   6.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   6.1  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   6.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   6.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   8.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   8.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   8.0  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 83  PPPVLARPKPLAPINPPAIV 102
           PP     P PL PI PP ++
Sbjct: 175 PPLPQVPPLPLPPIFPPTMI 194


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)

Query: 438 NSCSQPICPNSGNQP 452
           NSCSQP  P  G QP
Sbjct: 114 NSCSQPAAP--GGQP 126


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)

Query: 438 NSCSQPICPNSGNQP 452
           NSCSQP  P  G QP
Sbjct: 173 NSCSQPAAP--GGQP 185


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)

Query: 438 NSCSQPICPNSGNQP 452
           NSCSQP  P  G QP
Sbjct: 114 NSCSQPAAP--GGQP 126


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)

Query: 438 NSCSQPICPNSGNQP 452
           NSCSQP  P  G QP
Sbjct: 173 NSCSQPAAP--GGQP 185


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 441 SQPICPNSGNQPTCTSGCN 459
           +QP+C +   QP  TS  N
Sbjct: 109 TQPMCESLNTQPPVTSSSN 127


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 441 SQPICPNSGNQPTCTSGCN 459
           +QP+C +   QP  TS  N
Sbjct: 109 TQPMCESLNTQPPVTSSSN 127


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 441 SQPICPNSGNQPTCTSGCN 459
           +QP+C +   QP  TS  N
Sbjct: 109 TQPMCESLNTQPPVTSSSN 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,951
Number of Sequences: 317
Number of extensions: 2882
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 468
length of database: 114,650
effective HSP length: 59
effective length of query: 409
effective length of database: 95,947
effective search space: 39242323
effective search space used: 39242323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)