GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001724-TA|BGIBMGA001724-PA|undefined
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0070 - 542603-542686,542803-543441                               31   2.0  
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595...    31   2.6  
12_02_0297 + 17029850-17030047,17030814-17030973,17031666-170317...    30   3.4  
11_01_0066 - 536281-537196,537397-537452                               30   3.4  
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177...    30   4.5  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   6.0  

>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 77  SLAPITPPPVLARPKPLAPINPPAI 101
           ++AP+TPPP   +  P  P+ PP +
Sbjct: 76  AVAPVTPPPPTPKKAPPPPVTPPPV 100


>10_02_0157 -
           5954439-5954801,5956244-5956270,5956465-5956526,
           5956971-5957592
          Length = 357

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 80  PITPPPVLARPKP-LAPINPPAIVV 103
           P TPPP +  P P L P+ PP  +V
Sbjct: 51  PTTPPPAVVAPSPPLPPLTPPPAIV 75


>12_02_0297 +
           17029850-17030047,17030814-17030973,17031666-17031782,
           17032145-17032575
          Length = 301

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 78  LAPITPPPVLARPKPL----APINPPAIV 102
           L+P+ PPP LA P P     AP  PPA++
Sbjct: 121 LSPLMPPPPLAAPVPAAVSPAPATPPAVL 149


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 79  APITPPPVLARPKPLAPINPP 99
           AP TPP +   P+PL P +PP
Sbjct: 196 APPTPPTIARPPRPLPPASPP 216


>11_04_0068 -
           13116037-13116414,13116501-13116947,13117026-13117757,
           13118235-13118348
          Length = 556

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 390 LPRISVPAAPTICFSPNPIYRVHTIGTPSIKSVSRNFD 427
           +P  +VPAA  + + P P  RVH      + SV   ++
Sbjct: 443 MPTFTVPAAEGLAYKPTPETRVHDCAKVQVDSVKPKYE 480


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 80   PITPPPVLARPKPLAPINPP 99
            P  PPP L  P P+AP +PP
Sbjct: 1157 PPPPPPPLPPPPPVAPFHPP 1176


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,776
Number of Sequences: 37544
Number of extensions: 360788
Number of successful extensions: 1285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 24
length of query: 468
length of database: 14,793,348
effective HSP length: 85
effective length of query: 383
effective length of database: 11,602,108
effective search space: 4443607364
effective search space used: 4443607364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)