GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001724-TA|BGIBMGA001724-PA|undefined
         (468 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 430 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 461


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 498 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 6   MVVDRLQQIGFQKFRVPGGTFFITSSPDIILQ 37
           MVVDRL  I F  F V      +  +P II+Q
Sbjct: 498 MVVDRLCLIVFTLFTVLATIVILCRAPHIIVQ 529


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,045
Number of Sequences: 429
Number of extensions: 3319
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 468
length of database: 140,377
effective HSP length: 60
effective length of query: 408
effective length of database: 114,637
effective search space: 46771896
effective search space used: 46771896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)