Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001723-TA|BGIBMGA001723-PA|IPR007087|Zinc finger,
C2H2-type
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 90 3e-19
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 69 6e-13
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 60 3e-10
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 59 9e-10
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 54 2e-08
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 54 2e-08
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 52 1e-07
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 52 1e-07
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 51 2e-07
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 49 9e-07
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 44 3e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 37 0.003
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.15
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 29 0.79
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 5.6
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 90.2 bits (214), Expect = 3e-19
Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 74 ICSLKFEPIESEAK-VRKYKQPKNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCHM--C 130
+C IE E+K +R K+ + E CG+KY+ + L H R H+ ERP+ C C
Sbjct: 1 MCHFNELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGC 60
Query: 131 EKTFTMPLFLKVHVRTHTGEKPYQCLQ--CPKAFSNKAALLRHDRVHTGVKPYKC--PKC 186
K F LK+H R HT KP+ C C F + L RH VH KPY C C
Sbjct: 61 SKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGC 120
Query: 187 GKAFSQSNSMKLHVSTVHLKMPAPYKSKYR 216
+ FS+ ++ H+S H + PY Y+
Sbjct: 121 DECFSKHQQLRSHISACHTHL-LPYPCTYQ 149
Score = 58.8 bits (136), Expect = 9e-10
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 3 CDKTFSLEEECVRHYEEAHIDLDLDQEGTETDDVFLGYTDPNEVEVQIQGNVVQKVVCEF 62
CD+ FS ++ H H L L T D L + +++ + +K++
Sbjct: 120 CDECFSKHQQLRSHISACHTHL-LPYPCTY-QDCELRFATKQKLQNHVN-RAHEKIISYS 176
Query: 63 CGEVYASCTTHICSLKFEPIESEAKVRKYKQPKNIVCEVCGRKYTSNAALRYHQRVH--- 119
C + SC H K+ +++ +R+ P C +CGR++ + A LR+H +H
Sbjct: 177 CP--HESCVGHEGFEKWSQLQNH--IREAHVPS---CSICGRQFKTAAHLRHHVVLHQTT 229
Query: 120 -TGERPYKCHM--CEKTFTMPLFLKVHVRT-HTGEKPYQCLQCPKAFSNKAALLRHDRVH 175
+ Y C M C+K+FT LK H+ H G + C C F K L RH
Sbjct: 230 LEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERG 289
Query: 176 TGVKPYK--CPKCGKAFSQSNSMKLH 199
T K +K +CG + +H
Sbjct: 290 TCKKAHKPYINECGIKHDGIEGVAIH 315
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 127 CHMCEKTFTMPLFLKVHVRTHTG----EKPYQCLQ--CPKAFSNKAALLRHDRV-HTGVK 179
C +C + F L+ HV H K Y C C K+F+ +AL +H V H G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 180 PYKCPKCGKAFSQSNSMKLHV 200
+ C CG F + ++ H+
Sbjct: 266 AFHCDSCGTKFGYKHMLQRHL 286
Score = 39.9 bits (89), Expect = 4e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 109 NAALRYHQRVHTGERPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAAL 168
N R H+++ + P++ + + F L+ H+R P C C + F A L
Sbjct: 163 NHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIRE--AHVP-SCSICGRQFKTAAHL 219
Query: 169 LRHDRVHTGV----KPYKCPK--CGKAFSQSNSMKLHVSTVH 204
H +H K Y CP C K+F++S+++K H+S +H
Sbjct: 220 RHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIH 261
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 69.3 bits (162), Expect = 6e-13
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 130 CEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKCPKCGKA 189
C K FT LK H+ THT +P+QC C K+F+ + RH+++HTG+K + C C +
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQR 636
Query: 190 FSQSNSMKLH 199
F++ +++ H
Sbjct: 637 FARMDALNRH 646
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 78 KFEPIESEAKVRKYKQPKNIVCEV--CGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFT 135
K E S + K N VC C +++T L+ H HT RP++C +C+K+F
Sbjct: 551 KSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFA 610
Query: 136 MPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDRVHTG 177
+ H + HTG K + C+ C + F+ AL RH + G
Sbjct: 611 RQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKSEVG 652
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 70 CTTHICSLKF-EPIESEAKVRKYKQPKNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCH 128
CT C+ +F ++ + + + C +C + + R H+++HTG + + C
Sbjct: 572 CTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACV 631
Query: 129 MCEKTFTMPLFLKVHVRTHTGE 150
C + F L H ++ G+
Sbjct: 632 TCNQRFARMDALNRHYKSEVGQ 653
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 123 RPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCL--QCPKAFSNKAALLRHDRVHT 176
RPYKC +C K F H+RTHTGEKP+ C C K FS L RH R+HT
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 50.4 bits (115), Expect = 3e-07
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 151 KPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKC--PKCGKAFSQSNSMKLH 199
+PY+C C KAF RH R HTG KP+ C P C K FS+S+ + H
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 94 PKNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCHM--CEKTFTMPLFLKVHVRTHTGEK 151
P+ C +C + + H R HTGE+P+ C C K F+ L H R HT
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNAN 82
Query: 152 PYQCLQCPKAFSNKA 166
+ A +N A
Sbjct: 83 SRRNAAAAAAANNSA 97
Score = 30.3 bits (65), Expect = 0.34
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 179 KPYKCPKCGKAFSQSNSMKLHVST 202
+PYKCP C KAF + H+ T
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRT 47
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 58.8 bits (136), Expect = 9e-10
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 131 EKTFTMPLFLKVHVRTHT-GEKPYQCL--QCPKAFSNKAALLRHDRVHTGVKPYKCPKCG 187
E++FT LK R H G+ + C CPK+F+ K L RH+R H VK + C C
Sbjct: 4 EESFTEKP-LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCN 62
Query: 188 KAFSQSNSMKLHVSTVHLK 206
+AF++S+ + HV +HL+
Sbjct: 63 RAFARSDVLNRHVQQMHLQ 81
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 112 LRYHQRVHT-GERPYKCHM--CEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAAL 168
L+ R H G+ + C C K+FT L+ H RTH K + C C +AF+ L
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71
Query: 169 LRH 171
RH
Sbjct: 72 NRH 74
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 80 EPIESEAKVRKYKQPKNIVCEV--CGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFTMP 137
+P++ ++ + P+ C C + +T LR H+R H + + C C + F
Sbjct: 10 KPLKKRSRAHRLGDPR-FYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARS 68
Query: 138 LFLKVHVR 145
L HV+
Sbjct: 69 DVLNRHVQ 76
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 102 CGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKA 161
C ++ + H + H +RPY+C +C+ F LK H+R H +PY C +C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKR 508
Query: 162 FSNKAALLRH 171
F+ AL RH
Sbjct: 509 FNRLDALNRH 518
Score = 52.4 bits (120), Expect = 7e-08
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 130 CEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKCPKCGKA 189
C K ++ H++TH ++PY+C C F L RH R+H +PY C +C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKR 508
Query: 190 FSQSNSMKLH 199
F++ +++ H
Sbjct: 509 FNRLDALNRH 518
Score = 33.5 bits (73), Expect = 0.037
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 153 YQCLQ--CPKAFSNKAALLRHDRVHTGVKPYKCPKCGKAFSQSNSMKLHV 200
Y CL C K + K + H + H +PY+C C F + + +K H+
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHL 492
Score = 33.1 bits (72), Expect = 0.049
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 85 EAKVRKYKQPKNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCHMCEKTF 134
E+ ++ + + C++C + + L+ H R+H RPY C C K F
Sbjct: 461 ESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRF 509
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 125 YKCHMCEKTFTMPLFLKVHVRTHTGEKPYQC--LQCPKAFSNKAALLRHDRVH 175
Y+C C + F+ P LK+H +HTGE+P+ C C KAF+ ++ + RH R+H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 153 YQCLQCPKAFSNKAALLRHDRVHTGVKPYKC--PKCGKAFSQSNSMKLH 199
Y+C +C + FS ++L H HTG +P+ C CGKAF+ ++M+ H
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 99 CEVCGRKYTSNAALRYHQRVHTGERPYKCHM--CEKTFTMPLFLKVHVRTH 147
C C + ++ ++L+ H HTGERP+ C C K F + ++ H R H
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 52.0 bits (119), Expect = 1e-07
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 123 RPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCLQ-------CPKAFSNKAALLRH-DRV 174
+ Y C C + F LK H+R+HT EKP+ C + C + FS + LLRH ++
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKI 127
Query: 175 HTGVKPYKCPKCGKAFSQSNSMKLHVSTVHL 205
H +P + + A + + VST +L
Sbjct: 128 HRNPQPRRRRRSTTALPNPSLSNVSVSTTNL 158
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 178 VKPYKCPKCGKAFSQSNSMKLHV 200
VK Y C C +AF++ +K H+
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHI 89
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 123 RPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCL--QCPKAFSNKAALLRHDRVH 175
+ Y+C C++ F H+R+HTGEKP++C C K F+ + L+RH R H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 49.2 bits (112), Expect = 7e-07
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 151 KPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKC--PKCGKAFSQSNSMKLHVSTVHLK 206
K Y+C C + F + +RH R HTG KP++C P C K F++ + + HV T HL+
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRT-HLR 58
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 95 KNIVCEVCGRKYTSNAALRYHQRVHTGERPYKCH--MCEKTFTMPLFLKVHVRTH 147
K+ C C R + H R HTGE+P++C C+K FT L HVRTH
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 121 GERPYKCHMCEKTFTMPLFLKVHVRT-HTGEKPYQCLQCPKAFSNKAALLRHDRVHTGVK 179
G + + C C K F L+ H+R+ HT EKP+ C+ C K FS + L +H+R+H
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHERLHVNAS 477
Query: 180 P 180
P
Sbjct: 478 P 478
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 80 EPIESEAKVRKYKQPKNIVCEVCGRKYTSNAALRYHQR-VHTGERPYKCHMCEKTFTMPL 138
+P + V + K+ VC C +K+ + LR H R +HT E+P+ C +C K F+
Sbjct: 406 QPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRD 464
Query: 139 FLKVHVRTHTGEKP-YQCLQCPKAFSNKAA 167
L+ H R H P C P + + A
Sbjct: 465 NLRQHERLHVNASPRLACFFQPSGYYSSGA 494
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 141 KVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDR-VHTGVKPYKCPKCGKAFSQSNSMKLH 199
K V G K + C +C K F L RH R +HT KP+ C CGK FS+ ++++ H
Sbjct: 411 KTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH 469
Score = 32.3 bits (70), Expect = 0.085
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 177 GVKPYKCPKCGKAFSQSNSMKLHVSTVH 204
G K + CP+C K F +S ++ H+ ++H
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLH 446
Score = 32.3 bits (70), Expect = 0.085
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 75 CSLKFEPIESEAK-VRK-YKQPKNIVCEVCGRKYTSNAALRYHQRVHTGERP 124
CS KF+ E + +R + K VC +CG++++ LR H+R+H P
Sbjct: 428 CSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNASP 478
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 48.8 bits (111), Expect = 9e-07
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 149 GEKPYQC--LQCPKAFSNKAALLRHDRVHTGVKPYKCPKCGKAFSQSNSMKLHVSTVHLK 206
G+ Y+C C K+F+ K RH R HT K + CP C +F++S+ + HV+ H+K
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 121 GERPYKCHM--CEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRH 171
G+ YKC C K+FT + H R+HT K + C C +F+ L RH
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRH 65
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 102 CGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFTMPLFLKVHV 144
C + +T R H R HT + + C C +FT L HV
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/44 (40%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 163 SNKAALLRHDRVHTGVKPYKC--PKCGKAFSQSNSMKLHVSTVH 204
+++ AL+ H R HTG KP+ C P+C ++F++S+++ H+ TVH
Sbjct: 88 TSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 99 CEVCGRKYTSNAALRYHQRVHTGERPYKCHM--CEKTFTMPLFLKVHVRT 146
C G TS AL H R HTGE+P+ C + C+++FT L H+RT
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRT 129
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 140 LKVHVRTHTGEKPYQCL--QCPKAFSNKAALLRHDR-VH 175
L H+R+HTGEKP+ C +C ++F+ AL +H R VH
Sbjct: 93 LVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 150 EKPYQCLQCPKAFSNKAALLRHDRVHTGVKPYKCPKCGKAFSQSNSMKLHVSTVH 204
++ + C QC K F+ L RH H+ +P CP C + + +K H+ H
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
Score = 33.9 bits (74), Expect = 0.028
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 99 CEVCGRKYTSNAALRYHQRVHTGERPYKCHMCEKTFTMPLFLKVHVRTHTGEK 151
C+ C +++T + L H+ H+ P C CE LK H++ +K
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 122 ERPYKCHMCEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRH-DRVH 175
+R + C C K FT L H H+ +P C C K L RH R H
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 122 ERPYKCHM--CEKTFTMPLFLKVHVRTHTGEKPYQCLQCPKAFSNKAALLRHDRVHTGVK 179
++PYKC + C+K + LK H + H C + A + H K
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYH-KLHG--------HCSPITTPTPAPIPHQGFVVENK 397
Query: 180 PYKCPKCGKAFSQSNSMKLHVSTVHLKM 207
PY+C C K + N +K H + HL++
Sbjct: 398 PYRCEVCSKRYKNLNGLKYHRTHSHLQV 425
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 115 HQRVHTGERPYKCHMCEKTFTMPLFLKVHVRTHT 148
HQ +PY+C +C K + LK H RTH+
Sbjct: 389 HQGFVVENKPYRCEVCSKRYKNLNGLKYH-RTHS 421
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 99 CEVCGRKYTSNAALRYHQRVHT 120
CEVC ++Y + L+YH R H+
Sbjct: 401 CEVCSKRYKNLNGLKYH-RTHS 421
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 52 GNVVQKVVCEFCGEVYASCTTHICSLKF-EPIESEAKVRKYKQPKNIVCEVCGR 104
G + ++ C+ CGE A C H ++ +P+ + K K+ VC CG+
Sbjct: 61 GTIDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGK 114
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 85 EAKVRKYKQPK-NIVCEVCGRKYTSNAALRYHQRVHTGERPYK 126
E +V+K +P N++C C + + AL H+ + P+K
Sbjct: 162 EGRVQKALRPTPNLICSKCNTTFNHSTALMMHEATCLNQVPFK 204
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 3.2
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 44 NEVEV---QIQGNVVQKVVCEFCGEVYASCTTHICSLKFEPIESEAKVRKYKQPKNIVCE 100
NEV+V Q+Q + CE + SC H C+ K S+A+ R ++PK
Sbjct: 514 NEVQVTCEQLQNGFIP--TCERLCTILLSCGRHQCNKKCCSGYSKAQTRLARRPK----- 566
Query: 101 VCGRKYTSNAALRYHQRVHTGERPYKC-HMCEKTFTMPLFLKVHVRTHTGEKPYQCLQ 157
A LRYH E + C C K + H+ H G P +CL+
Sbjct: 567 --------GAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHFCQHM-CHRGPCP-RCLE 614
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 61 EFCGEVYASCTTHICSLKFEPIESEAKVRKYKQPKNIV-CEVCGRKYTSNAALRY-HQRV 118
EF E AS +H + +ES ++ + P+ + V + N +Y H R+
Sbjct: 515 EFILEDAASTLSHRTNPSSTAVESAPRILVVRIPEPLFFANVSQLEDRLNRLEKYGHPRM 574
Query: 119 HTGERPYK 126
H GE PY+
Sbjct: 575 HPGETPYR 582
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,385
Number of Sequences: 5004
Number of extensions: 48597
Number of successful extensions: 194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 56
length of query: 294
length of database: 2,362,478
effective HSP length: 72
effective length of query: 222
effective length of database: 2,002,190
effective search space: 444486180
effective search space used: 444486180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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