GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
         (442 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   1.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    25   1.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   1.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   2.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   2.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   5.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 314 DPNIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDK-DVQTQLTSNVSETLTDGLT 372
           +P+  N  +       P+G++      N         L+  D+    T+N+SET T  L+
Sbjct: 458 NPSAQNDLSGVNLSETPSGISSLLNLDNQQLELKPIDLNSGDLSMLETNNLSETFTQNLS 517

Query: 373 VQHRLVTRLRP--ACSLADLQNS 393
           +      R  P    SL  L NS
Sbjct: 518 LMDESEGRQEPNMTDSLTRLANS 540


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 69  GVRLIVLNLPEDEGEGLGFRVTRTLW 94
           GV++ + N  E     LG  +TRT+W
Sbjct: 313 GVKIDICNEEERNSHCLGGTITRTMW 338


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 15/92 (16%), Positives = 34/92 (36%)

Query: 235 KNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASPNRXXXXXXXXHRKGQYQLS 294
           K  P  +N+ ++ + E      +++ A +       +    N          R  Q    
Sbjct: 444 KYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAASRVNIQRMKQVYQQ 503

Query: 295 MMSKRKPETTEKYRQIYSSDPNIHNSTNASRR 326
           + + R  + + K++  +   PN+    N SR+
Sbjct: 504 LSNYRNVDNSAKFKDGFQEQPNVVTVGNPSRK 535


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7   DMCEKGVSEEIVFDRGVWKEKSCCSDPKGLGEGQENDDLLNMSHQSTGEIFSRNMEN 63
           D   +GV    VF  G   + S  S   G G G+E+DD     +Q    IF +   N
Sbjct: 136 DAARRGVLYSSVF-LGSPGDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKVATN 191


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 7   DMCEKGVSEEIVFDRGVWKEKSCCSDPKGLGEGQENDDLLNMSHQSTGEIFSRNMEN 63
           D   +GV    VF  G   + S  S   G G G+E+DD     +Q    IF +   N
Sbjct: 292 DAARRGVLYSSVF-LGSPGDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKVATN 347


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 286 HRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNAS 324
           H   Q+ +S + KR+P   +K     +S  + H+S+ +S
Sbjct: 32  HTAWQFGVSQIVKREPMDEDKNDSGVTSGSDFHSSSPSS 70


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 176 SDDCTVAVELRRRQQGGEVTPRARRGAEGALVLRLRLHRHQGPALRQIPSVLRKE 230
           +DD +   + R+  +  + +  ARR  E  + +R      +   L+ +   L+KE
Sbjct: 133 NDDPSYWEKRRKNNEAAKRSRDARRAKEDEIAIRCAFLERENCHLKFVTDTLKKE 187


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,634
Number of Sequences: 317
Number of extensions: 3867
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 442
length of database: 114,650
effective HSP length: 59
effective length of query: 383
effective length of database: 95,947
effective search space: 36747701
effective search space used: 36747701
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)