GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    30   0.74 
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   1.3  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    29   1.7  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   3.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   5.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   6.9  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   6.9  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 227 LRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTET-----ASATASPNRXXXX 281
           LRKE +P K     + L  E +    ++E +  T  ++P E      +  +A   +    
Sbjct: 771 LRKESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSE 830

Query: 282 XXXXHRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGN 341
               H+      S +S+   +T  K     +S P+  N++ AS ++ N + L  ++   +
Sbjct: 831 KPVSHQAKPSNASQLSRNTDDTQAKEAPKEASIPD--NASTASTKVSNDSHLKPDADKKS 888

Query: 342 INCN-CHSRKLDKDVQT-QLTSNVSETL--TDGLTVQHRLVTRLRPACSLADLQNSMPG 396
           ++    H+ K   D +T QL   ++ +    +  T ++  V   RP  SL  +   M G
Sbjct: 889 VSSELTHASKPSLDEKTMQLAKQIAVSFHGYEAPTRENLDVNDDRPKISLWGILKGMIG 947


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 291 YQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGL 333
           +  S  S    +   K  ++  SD  I+ ST+A RRL +P GL
Sbjct: 425 WDASAWSNTYKDLPNKLAKVKVSDRTIYKSTDAERRLVSPDGL 467


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 290 QYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRR 326
           Q  +S    ++ E  E+Y Q +SSDP++ +S N  +R
Sbjct: 192 QEYISFSHPKEREVDEEYIQNFSSDPSLKSSLNDLKR 228


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 292 QLSMMSKRKPETTEKYRQIYSSDPNIHNS-TNASRRLRNPTGLAGNSRAGNINCNCHSRK 350
           Q+S +    PE+ + Y ++YS       S   AS  ++   G + N R G  + N   +K
Sbjct: 329 QISQLMSEDPESDDFYYRVYSIIRGRKPSEEEASHFIQTYLGPSNNRRRGRRSEN-PMQK 387

Query: 351 LDKDVQTQLTSNVSETLTDGLTVQHRL----VTRLRPACSLADLQNSMPGCRLSTSLNNL 406
           L + +Q  ++S         L+++  L    V  +R    L +++        ++SLNN 
Sbjct: 388 LQQQLQRLVSSAKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNSSLNNF 447

Query: 407 GEHSKEQN 414
              S +++
Sbjct: 448 SGFSTKKD 455


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 380 RLRPACSLADLQNSMPGCRLSTSLNNLGEHSKE 412
           RLRP+ SLA L N+ P      SL+     SKE
Sbjct: 108 RLRPSTSLARLSNNAPRIPKEASLHENSISSKE 140


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 223 IPSVLRKEPLPPKNSPY-SRNLVAEQVFEAIATEYEIKTAIRRPTETASATASPNRXXXX 281
           + S ++ E   P   P  S N VA         E+ ++ A+  PTETA   +        
Sbjct: 413 VSSTVKNEVNVPSTIPTESENPVA---VGGTTAEHPVQEAVTAPTETAHDFSKETTTASK 469

Query: 282 XXXXHRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRR 326
               H K   +   ++ RKP +T +     S+      S+  +RR
Sbjct: 470 RVSKHDKASAEKHKVA-RKPSSTGQEPTTPSTPAKSAQSSKHARR 513


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 36  LGEGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRL 72
           LG+ +E  + LN  H ST E++    EN S ++  +L
Sbjct: 132 LGKKEELRNRLNFVHVSTDEVYGEQDENASVDEKSKL 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,761
Number of Sequences: 5004
Number of extensions: 78540
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 9
length of query: 442
length of database: 2,362,478
effective HSP length: 75
effective length of query: 367
effective length of database: 1,987,178
effective search space: 729294326
effective search space used: 729294326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)