GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584...    31   1.8  
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    31   2.4  
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    30   4.3  
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159           29   5.6  
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895...    29   5.6  
06_01_0116 - 907995-908813,909002-909286                               29   5.6  
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784...    29   5.6  
05_05_0129 - 22594527-22594922                                         29   7.4  
03_05_0007 - 19536239-19536532,19536937-19537047,19537126-195376...    29   7.4  
04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968...    29   9.8  

>07_01_0760 -
           5844349-5844401,5844521-5844665,5844782-5845297,
           5845405-5845596,5845686-5845817,5845926-5846069
          Length = 393

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 13/42 (30%), Positives = 28/42 (66%)

Query: 390 LQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTALG 431
           ++N + G     S+ +LG+H+ E + ++ ++DN++ +GTA G
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANG 282


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 103 VTPGSRADAAGLKTGDCLLQADGR 126
           VTPGS A+ AG + GD +++ DG+
Sbjct: 387 VTPGSPAEHAGFRPGDVVVEFDGK 410


>02_01_0297 +
           1986422-1986570,1986960-1987065,1987188-1987464,
           1987805-1988305,1989010-1990016,1990131-1990781,
           1991337-1991633,1991735-1992013,1993070-1993198,
           1993291-1993491,1993651-1993793,1993878-1994190,
           1994349-1994488,1995320-1995398,1995484-1995753,
           1996208-1996425,1996521-1996632
          Length = 1623

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 391 QNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTALGEFSLGM 437
           Q   P  + S  + ++G HS     HSN L+N  ++G + G  + GM
Sbjct: 254 QKQFPSNQNSHQIQHIGGHSNS-GMHSNMLENSSAYGLSDGHVNGGM 299


>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
          Length = 261

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 12/42 (28%), Positives = 27/42 (64%)

Query: 390 LQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTALG 431
           ++N + G     S+ +LG+H+ E + ++ ++DN++ +GT  G
Sbjct: 88  VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNG 129


>06_02_0135 +
           12188739-12189086,12189191-12189272,12189397-12189527,
           12189626-12189712,12189794-12189872,12190520-12190608,
           12190765-12190806,12191030-12191149,12191819-12191968,
           12192066-12192137,12192293-12192541
          Length = 482

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 100 VREVTPGSRADAAGLKTGDCLLQADGRDLLGL 131
           V +   G  AD AGL  GD L++ DG+ + GL
Sbjct: 218 VMDCIEGGPADRAGLHGGDELVEIDGKSVSGL 249


>06_01_0116 - 907995-908813,909002-909286
          Length = 367

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 191 GGEVTPRARRGAEGALVLRLRLHRHQGPALRQIPS--VLRKEPLPPKNSPYSRNLVAEQV 248
           GG  +    R    +L+L    H HQ P L   P+  V   E +PP  +  SR  + +  
Sbjct: 38  GGAASGYGSRPPLASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKVA 97

Query: 249 FEAIAT 254
             A AT
Sbjct: 98  SAAAAT 103


>03_06_0074 -
           31476094-31476215,31477803-31478238,31478438-31478485,
           31478569-31479018,31479567-31479681,31480052-31480905
          Length = 674

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 224 PSVLRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASP 275
           PS  RK PLPP+ SP  R  +               TA  + T T ++T +P
Sbjct: 37  PSSSRKPPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAP 88


>05_05_0129 - 22594527-22594922
          Length = 131

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 155 NCGVDPKDDPETPLIKELEELSDDCTVAVELRRRQQGGEVTPRARRGAEGALVLRLRLHR 214
           +  V P     TP+++    +     V +  RRR Q G      RRG E A+    R   
Sbjct: 26  SASVSPSWPRRTPMLRSSILMRQRVAVCIWRRRRLQRGSSEEGRRRGRERAMA-GWRAAA 84

Query: 215 HQGPALRQIPSVLRKEPLPPKNS 237
            +  A   +P +      PP+ S
Sbjct: 85  EEASAAAGVPQIRPPAAPPPRPS 107


>03_05_0007 -
           19536239-19536532,19536937-19537047,19537126-19537690,
           19537737-19537822
          Length = 351

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 102 EVTPGSRADAAGLKTGDCLLQADGRD 127
           +  PG+RA A G K GD   Q+ G D
Sbjct: 113 DAAPGARAGAEGTKAGDVSTQSGGED 138


>04_04_0998 -
           29996117-29996242,29996345-29996486,29996613-29996812,
           29997112-29997497,29997769-29998318,29998949-29999296
          Length = 583

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 15  EEIVFDRGVWKEKSCCSDPKGLGEGQ-ENDDLLNMSHQSTGEIF 57
           EE V      +   CC++ KG G+G+ E D++ N   +   EI+
Sbjct: 75  EEAVTAAAAARVGLCCTEEKGKGKGEKEEDEIRNNRQRQEDEIY 118


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,568
Number of Sequences: 37544
Number of extensions: 559050
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 12
length of query: 442
length of database: 14,793,348
effective HSP length: 84
effective length of query: 358
effective length of database: 11,639,652
effective search space: 4166995416
effective search space used: 4166995416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)