Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.066
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.20
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.26
SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.46
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12) 31 1.9
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 31 2.5
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_29587| Best HMM Match : zf-XS (HMM E-Value=8.9) 30 3.3
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23) 30 3.3
SB_28177| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.3
SB_51106| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 30 4.3
SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20) 29 7.5
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0) 29 7.5
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 29 7.5
SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 29 7.5
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) 29 7.5
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2) 29 10.0
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 35.9 bits (79), Expect = 0.066
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 52 STGEIFSRNMENQSDNDGVRLIVLNLPEDEGEGLGFRVTRTLWDPYP--WVREVTPGSRA 109
S E+ + E +G+ I L L ED+G +G V L P +++++ PG+ A
Sbjct: 2269 SLQELINARNEGAEIEEGILSIQL-LKEDQG--IGLMVIGGLDTPLGMLYIKDIQPGTPA 2325
Query: 110 DAAG-LKTGDCLLQADGRDLLGL 131
+ G L+TGD LLQ + L+G+
Sbjct: 2326 EKCGHLRTGDQLLQVNDECLVGV 2348
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 82 GEGLGFRVTRTLWDPYPWVREVT----PGSRADA-AGLKTGDCLLQADGRDLLGL 131
G G F+ P P V+E+T P A + +GL+ GD +L+ +GR + G+
Sbjct: 2671 GNGKAFKEILQKTPPEPSVKEITLEKGPSDSASSRSGLEIGDEVLEVNGRHMRGM 2725
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 34.3 bits (75), Expect = 0.20
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 98 PWVREVTPGSRADAAGLKTGDCLLQADGRDLLGLPVGQV 136
P V V GS A+ AG++ GD +LQ +G + GLP Q+
Sbjct: 2683 PHVIVVEDGSPAERAGVRKGDFILQVNGNAVKGLPHFQI 2721
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 33.9 bits (74), Expect = 0.26
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 99 WVREVTPGSRADAAGLKTGDCLLQADGRDLLGLPVGQV 136
+VR+V P AD AGL +GD ++ +G +L QV
Sbjct: 188 FVRQVAPNGPADKAGLSSGDQIVSVNGNQVLNRTYSQV 225
>SB_33963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 33.1 bits (72), Expect = 0.46
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 92 TLWDPYPWVREVTPGSRADAAGLKTGDCLLQADGRDLLGL 131
T D + V +TP S AD AGL GD L+ DG+ + L
Sbjct: 226 TEMDKFIMVDVITPKSPADLAGLHKGDVLIAVDGQKIESL 265
>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
Length = 217
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 60 NMENQSDNDGVRLIVLNLPEDEGEGLGFRVTRTLWDPYPWVREVTPGSRADAAGLKTGDC 119
N+ GVR ++L ++EG+ LG RV + +V V S A GL+ GD
Sbjct: 32 NLRRAEIKGGVREVIL-CKDNEGK-LGLRVRAV--NKGIFVAFVHKDSPAALGGLRFGDQ 87
Query: 120 LLQADGRDLLG 130
+LQ DG ++ G
Sbjct: 88 ILQIDGENMAG 98
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 30.7 bits (66), Expect = 2.5
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 24 WKEKSCCSDPKGLGEGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEG 82
W E S CS GLGE + N Q G + + S V +IVLN P D G
Sbjct: 448 WSEYSQCSKTCGLGEAFRTRNCTNPKPQHGG----KGCQGASTQRRVCVIVLNCPVDGG 502
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 30.7 bits (66), Expect = 2.5
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 35 GLGEGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEGEGLGFRVTRTLW 94
G+ E D N ++ +I ++ SD R +V+N + GE LG + + W
Sbjct: 200 GISEDSVEDAEYNCVLEAQ-KILGEDLSLLSDETKAREVVVN--KKPGEALGVMIVESGW 256
Query: 95 D---PYPWVREVTP-GSRADAAGLKTGDCLLQADGRDLLGLPVGQVAXXXXXXXXXXXVS 150
P + + G A + + GD +L + L+GLP+ + V+
Sbjct: 257 GSMIPTAIIAHLAKDGPAAKSGRVNVGDQILSVNNTSLVGLPLPECQNVIKNSRPGTKVT 316
Query: 151 LLVWNC 156
L +C
Sbjct: 317 LKTVSC 322
>SB_29587| Best HMM Match : zf-XS (HMM E-Value=8.9)
Length = 254
Score = 30.3 bits (65), Expect = 3.3
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 286 HRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCN 345
H G ++ +KR + S N++N ++ L N T S GN+N N
Sbjct: 162 HTSGVGNMNNGNKRTKVLYNTQTRHTSGVGNMNNGNKHAKVLDN-TQTRHTSGVGNVNSN 220
Query: 346 CHSRKLDKDVQTQLTSNV 363
H++ LD + QT+ TS V
Sbjct: 221 KHTKVLD-NTQTRHTSGV 237
>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
Length = 710
Score = 30.3 bits (65), Expect = 3.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 26 EKSCCSDPKGLGEGQENDDLLNMSHQST--GEIFSRNMENQSDNDGVRLIVLNLPEDEGE 83
+ S CS+ LG+ Q +D H S+ G ++ + + +D V+L + N+ D G
Sbjct: 537 QSSLCSNQSSLGDNQTGEDQTKSCHHSSKHGLASDESVSSDTSSDDVKLDLSNM-ADLGN 595
Query: 84 GLGFRVTR 91
G R
Sbjct: 596 GTSLASVR 603
>SB_28177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 316 NIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETLTDGLT 372
N++NS ++ L N T S GN+N + K+ + QT+ TS V DG+T
Sbjct: 24 NMNNSNKRTKVLDN-TQTGHTSGVGNMNNSNKRTKVLDNTQTRHTSGVGNMNNDGIT 79
>SB_51106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 205 ALVLRLRLHRHQGPALRQIPSVLRKEPLPPKNSPYSRNLVAEQVFE 250
A +LRL L PA R +P+ R EPL P R E+ +E
Sbjct: 110 ATLLRLSLRPRHRPAQRPLPADRRSEPLSHSKRPPPRRWKYEKRYE 155
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 99 WVREVTPGSRADAAG-LKTGDCLLQADGRDLLGLPVGQV 136
+++ ++PGS A+ G L+ GD +L+ +G D+ G+ +V
Sbjct: 1936 FIKTISPGSVAEEDGRLRVGDQILKVNGEDVQGMSHARV 1974
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 29.9 bits (64), Expect = 4.3
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 286 HRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCN 345
H G ++ +KR + S NI+N ++ L N T S GNIN
Sbjct: 282 HTSGVGNINNGNKRTKVLDNTQTRHTSGVGNINNGNKRTKVLDN-TQTRNTSGVGNINNG 340
Query: 346 CHSRKLDKDVQTQLTSNVSETLTDGLTVQHRLVTRLRPACSLADLQNSMPGCRL----ST 401
K+ + QT+ TS V + T+ R + ++ N ++ T
Sbjct: 341 NKRTKVLDNTQTRHTSGVGNMNNGNKRTKVLCNTQTRHTSGVGNMNNGNKRTKVLDNTQT 400
Query: 402 SLNNLGEHSKEQNQHSNSLDNLKS-HGTALGEFSLGMSATE 441
N + N+ + LDN ++ H + +G + G T+
Sbjct: 401 RHTNGVGNINNGNKRTKVLDNTQTRHTSGVGNMNNGNKRTK 441
>SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20)
Length = 285
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 99 WVREVTPGSRADA-AGLKTGDCLLQADGRDLLGLPVGQ 135
++ +TP AD GL+ GD LL + R L+GL Q
Sbjct: 177 FIVSITPNGPADKHGGLRPGDILLAVNDRSLVGLEHSQ 214
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 288 KGQYQLSMMSKRKPETTEKYRQIYSS---------DPNIHNSTNASRRLRNPTGLAGNSR 338
K + + R+ ET ++RQIY+ D ++ S + R P G+ G+ R
Sbjct: 1049 KTESYAEVKGNRQAETYARFRQIYNGIPFKYKPRCDEAVYRSPDPRHESRLPGGITGDGR 1108
Query: 339 AGNI 342
GN+
Sbjct: 1109 LGNV 1112
>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
Length = 652
Score = 29.1 bits (62), Expect = 7.5
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 320 STNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETLTDGLTVQHRLVT 379
ST A+RR L G+ R N N L++ Q N E D + V+
Sbjct: 73 STMAARR--GTYALEGDHRFSNDNSALSELALERCASVQNQDNPGEIKVDVVPVERE--- 127
Query: 380 RLRPACSLADLQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTALG 431
P +L +++ P C LS++ LG + + SNS+ N G +G
Sbjct: 128 EFDP-WALPAFKSAGPDCFLSSAFRLLGGRAAGEAFASNSIINNPVAGLMIG 178
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 29.1 bits (62), Expect = 7.5
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 299 RKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSR--KLDKDVQ 356
R+P + + S P + + S P+G G S+AGN + S+ KL +
Sbjct: 600 RRPTSDNQAGNGSSGPPRPTSGQSTSHVTHTPSGGIGGSQAGNASMTSSSKIIKLLSEYS 659
Query: 357 TQLTSNVSE---TLTDGLTVQHR------LVTRLRPACSLADLQNSMPGCRLSTSLNNLG 407
+ V L D L + R V ++P S+ +Q+ P ++ N
Sbjct: 660 HKNEDEVKALLWKLKDNLEQRRRAKKQGNTVAAVKPIASILTIQHQAP---VNLPNGNSN 716
Query: 408 EHSKEQNQHSNSLDNLKSHGTA 429
+ S Q Q SN ++ S GT+
Sbjct: 717 QQSLGQAQTSNEDNSRGSEGTS 738
>SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 7.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 223 IPSVLRKEPLPPKNSPYSRN 242
+P +L+KEP PPK+ P N
Sbjct: 86 VPELLQKEPTPPKSGPDQNN 105
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 376 RLVTRLRPACSLADLQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTALGEFS 434
RL + PA + ++ PG R S + NN ++ N ++N+ +N ++ G+F+
Sbjct: 659 RLFACMNPATDVGK-KDLPPGIRNSNNSNNNNNNNNNNNNNNNNNNNNNNNNNKYGKFT 716
>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 566
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 190 QGGEVTPRARRGAEGALV-LRLRLHRHQGPALRQIPSVLRKEPLPPKNSPYSR 241
Q G+V + + LV L LRL Q PA R +P+ R EPL P R
Sbjct: 84 QDGDVFVASYQKCATLLVRLSLRLRPRQRPAQRPLPADRRSEPLSHSKRPPPR 136
>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 28.7 bits (61), Expect = 10.0
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 290 QYQLSMMSKRKP---ETTEKYRQIYSSDPN----IHNSTNASRRLRNPTGLAGNSRAGNI 342
Q Q+ +++R P T + R++ SSD + I ++++ASR +P+ A SR+G+
Sbjct: 59 QEQVEQLNRRVPIDSSTPIERRELSSSDESDLSPIRDASSASRNNSSPSMSAARSRSGS- 117
Query: 343 NCNCHSRKLDKDVQTQLTSNVSET 366
SR L D + TSN S T
Sbjct: 118 -----SRSL--DFASSSTSNASNT 134
>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
Length = 442
Score = 28.7 bits (61), Expect = 10.0
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 310 IYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETLTD 369
I++++ ++H S N N GL N+++ + + N D+ V T T
Sbjct: 147 IHTNNQSVHTSHNICIHTNNQ-GLNTNNKSVHTSDNICVHNNDQGVNTN--DQGVNTNNQ 203
Query: 370 GLTVQHRLVTRLRPACSLADLQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLDNLKSHGTA 429
G+ ++ V A+ Q P + NN G H+ Q H+N+ SH
Sbjct: 204 GINTNNQGVN--------ANNQGIYPSDNICVHTNNQGIHTNNQGIHTNNQSVHTSHNIC 255
Query: 430 LGEFSLGMS 438
+ + G++
Sbjct: 256 IHTNNQGLN 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.131 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,966,683
Number of Sequences: 59808
Number of extensions: 624295
Number of successful extensions: 1334
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 36
length of query: 442
length of database: 16,821,457
effective HSP length: 84
effective length of query: 358
effective length of database: 11,797,585
effective search space: 4223535430
effective search space used: 4223535430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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