GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
         (442 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           24   2.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           24   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   6.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   6.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   9.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 19/222 (8%)

Query: 218 PALRQIPSVLRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASPNR 277
           P  R +  +  ++P P      ++    E++  A+ TE    T +   T + +    P+ 
Sbjct: 27  PTQRTMSKIQWRKPKPAMVEEKTQLRYLEEL-NALRTELGASTKLATDTTSENEENYPHY 85

Query: 278 XXXXXXXXHRK----GQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGL 333
                    +K    G   LS+   +     E  R ++S+       TN S  +R  T  
Sbjct: 86  QMSGAKQKKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYPTNRSLFIREQTEE 145

Query: 334 AGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETLTDGLTVQHRLVT----RLRPACSLAD 389
                          R +  ++ TQ  +    T    +  +H+L+     R+ PA     
Sbjct: 146 MYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQIGQKHKLLIGPSIRITPAKKRIK 205

Query: 390 LQNSM---PGCRLSTSL-------NNLGEHSKEQNQHSNSLD 421
           L+ S    P  RL+ S        N+   H+ ++N+HS++LD
Sbjct: 206 LEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLD 247


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 387 LADLQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLD 421
           L  L+ S P C  +  L  LG H ++ N  S  +D
Sbjct: 77  LVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGVD 111


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 387 LADLQNSMPGCRLSTSLNNLGEHSKEQNQHSNSLD 421
           L  L+ S P C  +  L  LG H ++ N  S  +D
Sbjct: 78  LVYLEPSPPFCEKNPKLGILGTHGRQCNDTSIGVD 112


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 225 SVLRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETAS 270
           ++ +K P        S +L ++QV    ++ + +K  +R+P +T S
Sbjct: 337 NIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMS 382


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 225 SVLRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETAS 270
           ++ +K P        S +L ++QV    ++ + +K  +R+P +T S
Sbjct: 337 NIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMS 382


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 293 LSMMSKRKPETTEKYRQIYSSDPNIHNSTNASRRLRNPT 331
           LS+    KPET++      S+    +N T++  R+ N T
Sbjct: 546 LSISDSTKPETSKGINAEPSNIEESNNMTDSFTRIANNT 584


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 229 KEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTE--TASATASPN 276
           +EPLPP   P   N++   +    +   +  T   RPT   T +    PN
Sbjct: 41  QEPLPPVTPPQGENMLDMDLRGIYSNRTDFTTTF-RPTAGMTFNGGVGPN 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,334
Number of Sequences: 429
Number of extensions: 5106
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 442
length of database: 140,377
effective HSP length: 60
effective length of query: 382
effective length of database: 114,637
effective search space: 43791334
effective search space used: 43791334
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)