Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001721-TA|BGIBMGA001721-PA|IPR001478|PDZ/DHR/GLGF
(442 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03560.1 68416.m00358 expressed protein 35 0.12
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 34 0.16
At3g09090.1 68416.m01069 defective in exine formation protein (D... 34 0.22
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri... 32 0.66
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF... 32 0.88
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 30 2.7
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 29 6.2
At4g10470.1 68417.m01719 expressed protein 29 6.2
At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containi... 29 6.2
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 6.2
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 6.2
At1g02260.1 68414.m00165 transmembrane protein, putative similar... 29 6.2
At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /... 29 8.2
At2g35700.1 68415.m04378 AP2 domain-containing transcription fac... 29 8.2
>At3g03560.1 68416.m00358 expressed protein
Length = 436
Score = 34.7 bits (76), Expect = 0.12
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 38 EGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEGEGLGFRVTRTLWDPY 97
E EN + + ++ E S E DG ++I +P ++ G GF V T +
Sbjct: 283 EKAENSSMFD-AYNGNEEFASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMF 341
Query: 98 PWVREVTPGSRADAAGLKTGDCLLQADGRDLL 129
WVR + G+R G + ++ AD D L
Sbjct: 342 QWVRHLEDGTRQYIEGATHPEYIVTADDVDKL 373
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 34.3 bits (75), Expect = 0.16
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 318 HNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETLTDGLTVQ 374
HNS+ ++ P G G+ R G N C S+ D+D+ ++ TS ++ ++ L Q
Sbjct: 1051 HNSSKTKLSIKEPPGNRGSRRGGRANKTCLSK--DQDLISEPTSRLTRSMRHSLREQ 1105
>At3g09090.1 68416.m01069 defective in exine formation protein
(DEX1) identical to defective in exine formation
[Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
Pfam domain PF01839: FG-GAP repeat
Length = 896
Score = 33.9 bits (74), Expect = 0.22
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 266 TETASATASPNRXXXXXXXXHRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNST---N 322
T+T + T +PN H Y + +++PE + I P +HNS+
Sbjct: 201 TQTNATTTTPNVTVSMTKEVHGANSYVSTQEDQKRPENNQT-EAIVKPTPELHNSSMDAG 259
Query: 323 ASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSNVSETL 367
A+ N T AG+ N+N N + ++D Q++++ + +ET+
Sbjct: 260 ANNLAANAT-TAGSRE--NLNRNVTTNEVD---QSKISGDKNETV 298
>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
protease HTRA2, mitochondrial precursor (High
temperature requirement protein A2) (HtrA2) (Omi
stress-regulated endoprotease) (Serine proteinase OMI)
(SP:O43464) {Homo sapiens}
Length = 459
Score = 32.3 bits (70), Expect = 0.66
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 100 VREVTPGSRADAAGLKTGDCLLQADGRDLL 129
V V PGS AD AG K GD +++ DG+ ++
Sbjct: 394 VPTVIPGSPADRAGFKPGDVVVRFDGKPVI 423
>At3g56880.1 68416.m06327 VQ motif-containing protein contains
PF05678: VQ motif
Length = 245
Score = 31.9 bits (69), Expect = 0.88
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 375 HRLVTRLRPACSLADLQNSMPGCRLSTSLNNLGEHS--KEQNQHSNSLDNLKSHGTALGE 432
HRL +RL P+C D +++P S+ L+N + + + + S + S GT
Sbjct: 161 HRLASRLPPSCGNLDRSSAVPTLDTSSFLSNHHQENIITDLGAPTGSFHHQSSAGTTTAN 220
Query: 433 FSLGMSATE 441
G SA E
Sbjct: 221 VGGGSSAVE 229
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
(CKI1) identical to GB:D87545
Length = 1122
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 31 SDPKGLGEGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEGEGLGFRVT 90
S PKG+ + ++ N ST + + N N+ + + +D G+G+ +
Sbjct: 555 SYPKGVSKFVKSMFCKNKEESST---YETEISNSIRNNANTMEFVFEVDDTGKGIPMEMR 611
Query: 91 RTLWDPYPWVREVTPGSRADAAGLKTGDCLLQADGRDL 128
+++++ Y VRE G + GL L++ G ++
Sbjct: 612 KSVFENYVQVRETAQGHQGTGLGLGIVQSLVRLMGGEI 649
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 45 LLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEG 82
L + S +T EIF+ NQ + D R I + +P +EG
Sbjct: 843 LWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEG 880
>At4g10470.1 68417.m01719 expressed protein
Length = 388
Score = 29.1 bits (62), Expect = 6.2
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 347 HSRKLDKDVQTQLTSNVSETLTDGLTVQHRLVTRLRPACSLADLQNSMPGCRLSTSLNNL 406
HS +D+ ++ + SN + + + + L P SLAD + ++ GC ++ + N+
Sbjct: 195 HSLVVDRSLRNRY-SNTRLDRSSNKSHGRKKLNPLAPRFSLADHKQNVYGCEVNQAANDF 253
Query: 407 GE-HSKEQNQHSNSLDNLKSHGT--ALGEFSLGMSATET 442
G+ H + S +D K T L E + ++ET
Sbjct: 254 GDRHGCSTSSPSQKVDVKKLLTTIHGLSELLTHVHSSET 292
>At2g35030.1 68415.m04297 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 627
Score = 29.1 bits (62), Expect = 6.2
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 28 SCCSDPKGLGEGQENDDLLNMSHQSTGEIFSRNMENQSDNDGVRLIVLNLPEDEG 82
S CSD GL EGQ+ L++ S EI + + N G LI D G
Sbjct: 339 SACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG-ELIAARKMFDNG 392
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.1 bits (62), Expect = 6.2
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 226 VLRKEPLP-PKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASPNRXXXXXXX 284
V R+ PLP + SP R L + I ++ IRRP + S++ SP +
Sbjct: 296 VRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRS--RSPIRRPGRSRSSSISPRKGRGPAGR 353
Query: 285 XHRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNAS 324
R Y S +R P + R +S+N+S
Sbjct: 354 RGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSS 393
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.1 bits (62), Expect = 6.2
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 226 VLRKEPLP-PKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASPNRXXXXXXX 284
V R+ PLP + SP R L + I ++ IRRP + S++ SP +
Sbjct: 303 VRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRS--RSPIRRPGRSRSSSISPRKGRGPAGR 360
Query: 285 XHRKGQYQLSMMSKRKPETTEKYRQIYSSDPNIHNSTNAS 324
R Y S +R P + R +S+N+S
Sbjct: 361 RGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSS 400
>At1g02260.1 68414.m00165 transmembrane protein, putative similar to
P protein (Melanocyte-specific transporter protein)
(SP:Q04671) {Homo sapiens}; contains 8 transmembrane
domains
Length = 502
Score = 29.1 bits (62), Expect = 6.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 307 YRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQLTSN 362
+ + S D N+ +A+ LRN G AG S + N N SR+ D ++Q SN
Sbjct: 240 FSPVSSEDSNLR--MDAAETLRNRAGSAGESELISCNSNA-SREQHNDAESQGESN 292
>At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650: CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
[Glycine max]; similar to SEC14-like protein (GB:U82515)
[D. discoideum]
Length = 301
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 300 KPETTEKYRQIYSSDPNIHNSTNASRRLRNPTGLAGNSRAGNINCNCHSRKLDKDVQTQL 359
+P+T K + +YS DPN + + G + N HS ++ +D + +L
Sbjct: 202 EPKTRNKVKFVYSDDPNTKVIMEENFDMEKMELAFGGNDDSGFNIEKHSERMKEDDKKRL 261
Query: 360 TS 361
S
Sbjct: 262 AS 263
>At2g35700.1 68415.m04378 AP2 domain-containing transcription
factor, putative pFAM domain (PF00847)
Length = 194
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 217 GPALRQIPSVLRKEPLPPKNSPYSRNLVAEQVFEAIATEYEIKTAIRRPTETASATASP 275
G A P + P P P A A+A + +++T+ P+ T + T+SP
Sbjct: 94 GSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSP 152
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.131 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,484,004
Number of Sequences: 28952
Number of extensions: 436025
Number of successful extensions: 816
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 14
length of query: 442
length of database: 12,070,560
effective HSP length: 83
effective length of query: 359
effective length of database: 9,667,544
effective search space: 3470648296
effective search space used: 3470648296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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