GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11; Amniota|...    41   0.025
UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3; T...    40   0.044
UniRef50_Q966Q0 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  
UniRef50_Q966P9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q17IR4 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  
UniRef50_A2EUZ9 Cluster: Kelch motif family protein; n=1; Tricho...    33   8.8  

>UniRef50_Q96H12 Cluster: UPF0439 protein C9orf30; n=11;
          Amniota|Rep: UPF0439 protein C9orf30 - Homo sapiens
          (Human)
          Length = 275

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 4  RSEAQLKKCWDNLKTRRKHFLANEKRQRMK 33
          R   QLKKCW+N+K R K  +A+E+R+++K
Sbjct: 65 RDFKQLKKCWENIKARTKKIMAHERREKVK 94


>UniRef50_Q28J92 Cluster: UPF0439 protein C9orf30 homolog; n=3;
          Tetrapoda|Rep: UPF0439 protein C9orf30 homolog -
          Xenopus tropicalis (Western clawed frog) (Silurana
          tropicalis)
          Length = 365

 Score = 40.3 bits (90), Expect = 0.044
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 4  RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGG 36
          R   QLKKCW+N+K R K  +A+E+R++ K  G
Sbjct: 65 RDFKQLKKCWENIKARTKKIMAHERREKGKLFG 97


>UniRef50_Q966Q0 Cluster: Putative uncharacterized protein; n=2;
            Caenorhabditis|Rep: Putative uncharacterized protein -
            Caenorhabditis elegans
          Length = 1148

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 2    HKRSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCI--PNEPQPGSSNETLIFAEVL 59
            H    ++  +C DN    RK F   EK   +     +C+  P+E +P ++     F E  
Sbjct: 977  HWSKWSEWSRCHDNSTRERKRFCVGEKGSEL-VSNCECLGKPHEEEPCNATG---FIEQS 1032

Query: 60   LDQTDVELRGVIDSDTIYSSEGGNVRTRVIQEE 92
             ++TD E+   +D      + GG+V     +EE
Sbjct: 1033 NEETDREIENNLDKLLEEDNAGGDVELHKKKEE 1065


>UniRef50_Q966P9 Cluster: Putative uncharacterized protein; n=1;
            Caenorhabditis elegans|Rep: Putative uncharacterized
            protein - Caenorhabditis elegans
          Length = 1121

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 2    HKRSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCI--PNEPQPGSSNETLIFAEVL 59
            H    ++  +C DN    RK F   EK   +     +C+  P+E +P ++     F E  
Sbjct: 950  HWSKWSEWSRCHDNSTRERKRFCVGEKGSEL-VSNCECLGKPHEEEPCNATG---FIEQS 1005

Query: 60   LDQTDVELRGVIDSDTIYSSEGGNVRTRVIQEE 92
             ++TD E+   +D      + GG+V     +EE
Sbjct: 1006 NEETDREIENNLDKLLEEDNAGGDVELHKKKEE 1038


>UniRef50_Q17IR4 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 287

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 4   RSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAEVLLDQT 63
           RS  + +K W + K + K+ L + KR+   TGGG   PN+ +  S  E  +   + LD+T
Sbjct: 64  RSPKEWQKVWTDFKLKIKNKLVHNKREANATGGG---PNKMKVLSPIEEAVAKLLSLDKT 120


>UniRef50_A2EUZ9 Cluster: Kelch motif family protein; n=1;
           Trichomonas vaginalis G3|Rep: Kelch motif family protein
           - Trichomonas vaginalis G3
          Length = 1419

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 114 QKKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCR 153
           QK+E E   K  EE  LK + ER+AAE+ K   +A+R  +
Sbjct: 918 QKEEEERKQKEEEERKLKEEQERKAAEEKKAKEEAERKAK 957


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,218,652
Number of Sequences: 1657284
Number of extensions: 5866321
Number of successful extensions: 18532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18514
Number of HSP's gapped (non-prelim): 21
length of query: 247
length of database: 575,637,011
effective HSP length: 99
effective length of query: 148
effective length of database: 411,565,895
effective search space: 60911752460
effective search space used: 60911752460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 71 (32.7 bits)