GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.63 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   1.9  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   4.4  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   7.8  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 47  GSSNETLIFAEVLLDQTDVELRGVIDSDTIYSSEGGNVRTRVIQEEFN 94
           GS+N      E LLD+ D+  + +    T++S++G + + R ++E+ +
Sbjct: 740 GSTNSKERIIEYLLDKLDLRKKEIAAESTLWSNDGIDDKLRDLREQMS 787


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 8   QLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAEVLLDQTDVEL 67
           QL+K  D+    R H+  +  RQ  K      I NEPQ   +NE  IF E +   +D+EL
Sbjct: 684 QLRKLADHPMLFRIHYKDDILRQMAKA-----IMNEPQYKKANELYIF-EDMQYMSDIEL 737

Query: 68  RGV 70
             +
Sbjct: 738 HNL 740


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 114 QKKEREWMMKAAEEVYLKAK---AEREAAEDIKKYNQAKRD 151
           QKK+ E   +AAEE   KA    A ++A ED KK    KRD
Sbjct: 315 QKKKEEEERRAAEEAAAKASAAAANKKAKEDKKK--AQKRD 353


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 111 FQFQKKEREWMMKAAEEVYLK-AKAEREAAEDIKKYNQAKRDCR 153
           F F +KERE  + + +E++ K  + +R+  ED+      K + R
Sbjct: 228 FSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEER 271


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 42  NEPQPGSSNETLIFAEVLLDQTDVELRGVIDSDTIYSSEGGNVRTR 87
           N    G+  E+ + A   +D T   L  ++D DT+ +  G +  +R
Sbjct: 111 NTEHLGADTESYLSANDFIDSTSEALTKIVDVDTLSAPFGNDSNSR 156


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 40  IPNEPQPGSSNETLIFAEVLLDQTDVELRGVIDSDTIYSSEGGNV 84
           +P+  QP  SN+  + + +LL ++ +E+  V++  T   +E  N+
Sbjct: 497 VPSCSQPDESNKEGVASCLLLQKSGMEMTSVLEYSTPNPAEVQNI 541


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,660
Number of Sequences: 5004
Number of extensions: 24015
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 7
length of query: 247
length of database: 2,362,478
effective HSP length: 71
effective length of query: 176
effective length of database: 2,007,194
effective search space: 353266144
effective search space used: 353266144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)