GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0093 - 1360596-1360625,1363562-1364266                           32   0.38 
11_04_0033 + 12567208-12567642                                         29   3.5  
07_01_0074 + 537041-537139,538307-538428,538525-538687                 29   3.5  
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    29   3.5  

>09_01_0093 - 1360596-1360625,1363562-1364266
          Length = 244

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 114 QKKEREWMMKAAEEVYLKAKAEREAAEDIKKY 145
           QKKE E MMK+A+E ++K+ A     + I+KY
Sbjct: 56  QKKEYELMMKSAQEQFMKSFAATRQGKVIQKY 87


>11_04_0033 + 12567208-12567642
          Length = 144

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/22 (54%), Positives = 19/22 (86%)

Query: 114 QKKEREWMMKAAEEVYLKAKAE 135
           QKK+ E+MMK+A+E ++K+ AE
Sbjct: 46  QKKDFEFMMKSAQEQFMKSFAE 67


>07_01_0074 + 537041-537139,538307-538428,538525-538687
          Length = 127

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 130 LKAKAEREAAEDIKKYNQAKRDCRNV 155
           LKAK +RE  ED++K  + + + RNV
Sbjct: 46  LKAKVKREMIEDVEKVKRVENEDRNV 71


>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 116 KEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKR 150
           K+R+   +  EE  ++AK  +E +E  KK N+AK+
Sbjct: 390 KKRKQQQQQGEEESVRAKKPKERSEGAKKSNKAKK 424


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,906,918
Number of Sequences: 37544
Number of extensions: 161780
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 4
length of query: 247
length of database: 14,793,348
effective HSP length: 80
effective length of query: 167
effective length of database: 11,789,828
effective search space: 1968901276
effective search space used: 1968901276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)