GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001718-TA|BGIBMGA001718-PA|undefined
         (247 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    33   0.19 
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    33   0.19 
U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    29   3.1  
L10986-10|AAL08032.1|  111|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
            protein C36B7.5b protein.
          Length = 1148

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 2    HKRSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCI--PNEPQPGSSNETLIFAEVL 59
            H    ++  +C DN    RK F   EK   +     +C+  P+E +P ++     F E  
Sbjct: 977  HWSKWSEWSRCHDNSTRERKRFCVGEKGSEL-VSNCECLGKPHEEEPCNATG---FIEQS 1032

Query: 60   LDQTDVELRGVIDSDTIYSSEGGNVRTRVIQEE 92
             ++TD E+   +D      + GG+V     +EE
Sbjct: 1033 NEETDREIENNLDKLLEEDNAGGDVELHKKKEE 1065


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
            protein C36B7.5a protein.
          Length = 1121

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 2    HKRSEAQLKKCWDNLKTRRKHFLANEKRQRMKTGGGQCI--PNEPQPGSSNETLIFAEVL 59
            H    ++  +C DN    RK F   EK   +     +C+  P+E +P ++     F E  
Sbjct: 950  HWSKWSEWSRCHDNSTRERKRFCVGEKGSEL-VSNCECLGKPHEEEPCNATG---FIEQS 1005

Query: 60   LDQTDVELRGVIDSDTIYSSEGGNVRTRVIQEE 92
             ++TD E+   +D      + GG+V     +EE
Sbjct: 1006 NEETDREIENNLDKLLEEDNAGGDVELHKKKEE 1038


>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 18  TRRKHFLANEKRQRMKTGGGQCIPNEPQPGSSNETLIFAEVLLDQTDVELRGVIDSDTIY 77
           T   H L NE R  +   G Q      +  + +  L+ + ++      + +GV+D DTIY
Sbjct: 116 TEYVHRLRNELRTLLDEQGNQTTAALCKHWNLSSELLQSLLIEKLGSSDFQGVVDGDTIY 175

Query: 78  SSEGGNVRTRVIQ 90
           +S   N R  V++
Sbjct: 176 TSSFLNARQLVLR 188


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 113 FQKKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKR 150
           + K   +W +K  EE Y + + + E A  +KK N++K+
Sbjct: 505 YLKDTSQWRLKPIEETYAQKEEKIEDAWQLKKANRSKQ 542


>L10986-10|AAL08032.1|  111|Caenorhabditis elegans Hypothetical
           protein F10E9.11 protein.
          Length = 111

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 115 KKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCRN 154
           KK+++     A++VYL+ K E+   E+ K+  +A+R+ RN
Sbjct: 24  KKQKKMSFSQAQDVYLRLKQEK---EEEKQRERAEREKRN 60


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 111 FQFQKKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCRNVAG 157
           ++  KKE +   K  EE+  K KAE++  E+ KK    +    + AG
Sbjct: 533 YEVDKKEFDEWEKEQEELKKKEKAEKKEKEEKKKTEGEEEKNEDAAG 579


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 111 FQFQKKEREWMMKAAEEVYLKAKAEREAAEDIKKYNQAKRDCRNVAG 157
           ++  KKE +   K  EE+  K KAE++  E+ KK    +    + AG
Sbjct: 549 YEVDKKEFDEWEKEQEELKKKEKAEKKEKEEKKKTEGEEEKNEDAAG 595


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,871
Number of Sequences: 27539
Number of extensions: 138945
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 7
length of query: 247
length of database: 12,573,161
effective HSP length: 80
effective length of query: 167
effective length of database: 10,370,041
effective search space: 1731796847
effective search space used: 1731796847
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)