Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001717-TA|BGIBMGA001717-PA|IPR004457|Zinc finger,
ZPR1-type
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23) 129 6e-30
SB_59590| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 3e-05
SB_17625| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.8) 35 0.13
SB_40928| Best HMM Match : MtrG (HMM E-Value=6) 35 0.17
SB_34404| Best HMM Match : MtrG (HMM E-Value=6) 35 0.17
SB_1673| Best HMM Match : MtrG (HMM E-Value=6) 35 0.17
SB_54537| Best HMM Match : Mlp (HMM E-Value=2.4) 35 0.17
SB_44548| Best HMM Match : MtrG (HMM E-Value=6) 35 0.17
SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0) 35 0.17
SB_8271| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.17
SB_54859| Best HMM Match : RVT_1 (HMM E-Value=0) 34 0.22
SB_37314| Best HMM Match : Mlp (HMM E-Value=2) 34 0.22
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.22
SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 34 0.22
SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43) 34 0.29
SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 34 0.29
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 33 0.38
SB_36393| Best HMM Match : IF2_N (HMM E-Value=5.1) 33 0.38
SB_6031| Best HMM Match : RVT_1 (HMM E-Value=3.4) 33 0.38
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 33 0.51
SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16) 31 2.0
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 30 4.7
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8) 29 8.2
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17) 29 8.2
SB_36563| Best HMM Match : DUF288 (HMM E-Value=5.3) 29 8.2
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7) 29 8.2
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2) 29 8.2
>SB_40038| Best HMM Match : zf-ZPR1 (HMM E-Value=6.2e-23)
Length = 406
Score = 129 bits (311), Expect = 6e-30
Identities = 61/132 (46%), Positives = 87/132 (65%)
Query: 52 QQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHP 111
+ DLNRQVVK D +VR+PELDFE+ SQKGE+ T+EGI+SRA+ GL ++Q R++ P
Sbjct: 33 EMDLNRQVVKQDSAAVRVPELDFEVPMFSQKGELNTIEGILSRAVQGLEREQPLRKALDP 92
Query: 112 DAAAKIDEFVSKLQALKDLSTPWTLQLEDISGNCFIENPQMPKKDPRCERTDFKRSKAQN 171
D A KI+EF+ K++ + +T ++D SGN FIENP PK DP ++ R+ QN
Sbjct: 93 DTANKIEEFIGKMKECIEGEKSFTFVIDDPSGNSFIENPLAPKADPNLATKEYTRTAEQN 152
Query: 172 HQLGIFMHDEVQ 183
+L I ++ Q
Sbjct: 153 LKLNIQPENQEQ 164
Score = 32.7 bits (71), Expect = 0.67
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 384 FIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLTP 421
FI ++ + +E ++ T V+DDP+GNS++ ++PL P
Sbjct: 101 FIGKMKECIEGEKSFTFVIDDPSGNSFI----ENPLAP 134
>SB_59590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 47.2 bits (107), Expect = 3e-05
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 28/80 (35%)
Query: 398 VTVVLDDPAGNSYVQSLADDPLTPDDGEPAGPSPYLAAPPGDPLSFTINIISGLKVERYV 457
V ++LDDPAGNSY+Q++ AP DP LKVE+Y
Sbjct: 9 VHIILDDPAGNSYIQNVY-------------------APDPDP---------ELKVEQYE 40
Query: 458 RTFEQNEELGLNDMKTENYE 477
RT EQNE+LGL MKTE YE
Sbjct: 41 RTEEQNEDLGLVGMKTEGYE 60
Score = 35.9 bits (79), Expect = 0.072
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 138 LEDISGNCFIENPQMPKKDPRCERTDFKRSKAQNHQLGI 176
L+D +GN +I+N P DP + ++R++ QN LG+
Sbjct: 13 LDDPAGNSYIQNVYAPDPDPELKVEQYERTEEQNEDLGL 51
>SB_17625| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.8)
Length = 217
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVNGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_40928| Best HMM Match : MtrG (HMM E-Value=6)
Length = 272
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_34404| Best HMM Match : MtrG (HMM E-Value=6)
Length = 253
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 40 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 99
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 100 DQELEKAISNTKLGKSPG 117
>SB_1673| Best HMM Match : MtrG (HMM E-Value=6)
Length = 220
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_54537| Best HMM Match : Mlp (HMM E-Value=2.4)
Length = 387
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 215 RNSHPVRSKEGTLLADSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 274
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 275 DQELEKAISNTKLGKSPG 292
>SB_44548| Best HMM Match : MtrG (HMM E-Value=6)
Length = 272
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_41617| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 675
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_8271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 34.7 bits (76), Expect = 0.17
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 78 RNSHPVRSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 137
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 138 DQELEKAISNTKLGKSPG 155
>SB_54859| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 559
Score = 34.3 bits (75), Expect = 0.22
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 30 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 89
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 90 DQELEKAISNTKLGKSPG 107
>SB_37314| Best HMM Match : Mlp (HMM E-Value=2)
Length = 360
Score = 34.3 bits (75), Expect = 0.22
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 270 RTSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 329
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 330 DQELEKAISNTKLGKSPG 347
>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 34.3 bits (75), Expect = 0.22
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 344 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 403
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 404 DQELEKAISNTKLGKSPG 421
>SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 602
Score = 34.3 bits (75), Expect = 0.22
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 429 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVT 488
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 489 DQELEKAISNTKLGKSPG 506
>SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)
Length = 1074
Score = 33.9 bits (74), Expect = 0.29
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 489 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDEFDQLPIMQSMDDPVT 548
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 549 DQELEKAISNTKLVKSPG 566
>SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 683
Score = 33.9 bits (74), Expect = 0.29
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 429 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDEFDQLPIMQSMDDPVT 488
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 489 DQELEKAISNTKLGKSPG 506
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 33.5 bits (73), Expect = 0.38
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 346 CPHRGQRAAT---RPAAVRSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVL 402
CP R RA +P+A R RY+ +++L + R + K +T +
Sbjct: 12 CPVRKARAKQSLPKPSARRRKTHQRYRKTTTLK---------MTRGAQTVRTKGAITRNM 62
Query: 403 DDPAGNSYVQSLADDPLTPDDGEPAGPSPYLAAPPGDPLSFTINIISGLKVERYVRTFEQ 462
G V + AD+ +GEP+G P APP F S L+V+R ++ +
Sbjct: 63 KKHEG---VGNAADNEEIESEGEPSGSEPMNIAPP----LFPPESASRLRVKRTLQLTPE 115
Query: 463 NEELGLNDMKTENYE 477
E LN+ NY+
Sbjct: 116 KEAAKLNNSSMGNYK 130
>SB_36393| Best HMM Match : IF2_N (HMM E-Value=5.1)
Length = 275
Score = 33.5 bits (73), Expect = 0.38
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 361 RSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLT 420
R+ R K + L I + R++E +D+L L V + + D + DDP+T
Sbjct: 53 RNSHPVRSKEGTLLADPIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMLSMDDPVT 112
Query: 421 PDDGEPAGPSPYLAAPPG 438
+ E A + L PG
Sbjct: 113 DQELEKAISNTKLGKSPG 130
>SB_6031| Best HMM Match : RVT_1 (HMM E-Value=3.4)
Length = 378
Score = 33.5 bits (73), Expect = 0.38
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 367 RYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLTPDDGEP 426
R K + L I + R++E +D+L L V + + D + DDP+T + E
Sbjct: 84 RSKEGTLLTDSIEVKGRWVEHFSDLLNLPSDVDLKIVDELDQLPIMQSMDDPVTDQELEK 143
Query: 427 AGPSPYLAAPPG 438
A + L PG
Sbjct: 144 AISNTKLGKSPG 155
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 33.1 bits (72), Expect = 0.51
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 2 TRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVK 61
++V R+P YK+V++M+ + C +PG E E G+ +K+ +S LNR
Sbjct: 305 SKVAAGRLPRYKDVILMADLVDSC-------KPGDEIELTGI-YKINYDS--SLNRS--N 352
Query: 62 SDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQ 103
I E +F I Q K VT++ +AI L++D+
Sbjct: 353 GFPVFATIIEANF-ITKQDDKMAVTSLTDEDIKAINALSKDE 393
>SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)
Length = 587
Score = 31.1 bits (67), Expect = 2.0
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 35 GGEYEELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISR 94
G E E + ++ E + L R +KS+ + + E + + + Q+ K + ++
Sbjct: 396 GDELESMEEKF-FNYEKENSLLRGTIKSNESLIGTLEFNLQDSTQTLK-LLYKERDLLKN 453
Query: 95 AITGLNQDQESRRSQHPDAAAKIDEFV 121
ITGL + ++ RSQ P++ +FV
Sbjct: 454 RITGLLDEIKALRSQKPESKQTFSDFV 480
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 333 PTARHPGPAPALPCPHRGQRAATRPAAVRSDQ 364
P+ HP P PA PH AA RP DQ
Sbjct: 147 PSKPHPSPTPAQAPPHSRPVAAKRPMPSTPDQ 178
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 4.7
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Query: 23 EECGYQNNEIQPGGEY-EELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQ 81
E C NEI E EEL ++ V +++L V ++R + E+ +
Sbjct: 1303 ETCNKLENEIGTLRESREELSKKYTQSVAKEKELTHLV-----ETLRSNKKQLELLVEEM 1357
Query: 82 KGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFVSKLQALKDL 130
K E VE ++ + + L +ES S + D DE LK+L
Sbjct: 1358 KNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKEL 1406
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 29.5 bits (63), Expect = 6.2
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 214 ADEVLQF-RTNCPDCNSPANTNMKITKIPHFKEVVIMATTCDYCGHRTNEVKS---GGGI 269
A E+L+ NCPD S +N ++ ++ HFK++ A C + +N + S +
Sbjct: 268 AQEILKLIGENCPDVESLDVSNNRLFQLDHFKDLATQAPGIK-CLNLSNTMGSYIPDPAV 326
Query: 270 EDMGVRF 276
+D+G +F
Sbjct: 327 KDLGPKF 333
>SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)
Length = 302
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 174 LGIFMHDEVQDDLTPTPLTPFSEKLLTPADPAECSLEQMTADEVLQFRTNCPDCNSP 230
L I ++ ++ + P F+ ++P P LE + +V++ R PD N P
Sbjct: 36 LNIQLNLKIDEQPKPLDENDFTTNKMSPPRPKALRLEDLKQRDVIRHRERAPDENDP 92
>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
Length = 1084
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 244 KEVVIMATTCDYCGHRTNEVKSGGGIEDMGVRFEVRVATKDDFSRD 289
KE IM CD G + NE + IE + R VR A D SRD
Sbjct: 166 KEQRIMELKCDIEGGKQNEARQSALIESL--RHRVREAEDDAESRD 209
>SB_36563| Best HMM Match : DUF288 (HMM E-Value=5.3)
Length = 497
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 333 PTARHPGPAPALPCPHRGQR--AATRPAAVRSDQTSRYKTSSSLVTYIIITRRFIERLTD 390
P H GP P L PHR +R A + + Q +++ + T I R ++ L D
Sbjct: 47 PFLAHRGPEPCLQSPHRRKRPLAYSVGRRIHQQQHTQFHDLADERTSGFIERLYL--LVD 104
Query: 391 VLELKE 396
V+E+++
Sbjct: 105 VVEMRD 110
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.1 bits (62), Expect = 8.2
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 358 AAVRSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADD 417
+A S QT + ++ T T V+E + VV+ P N ++ + D
Sbjct: 1567 SASESTQTQQSSQTTQSTTPTATALAVDSTTTSVMESRTQSVVVI--PTVNIEMEPVYD- 1623
Query: 418 PLTPDDGEPAGPSPYLAAPPGDP 440
P P D E P P + AP DP
Sbjct: 1624 PRVPVDKEKVNPLPEVKAPEVDP 1646
>SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7)
Length = 354
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 174 LGIFMHDEVQDDLTPTPLTPFSEKLLTPADPAECSLEQMTADEVLQFRTNCPDCNSP 230
L I ++ ++ + P F+ ++P P LE + +V++ R PD N P
Sbjct: 36 LNIQLNLKIDEQPKPLDENDFTTNKMSPPRPKALRLEDLKQRDVIRHRERAPDENDP 92
>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
Length = 835
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 148 ENPQMPKKDPRCERTDFKRSKAQNHQLGIFMHDEVQDDLTPTPLTPFSEK 197
E ++ K PR + + + SK H HD V DD P P P K
Sbjct: 578 EEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRK 627
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,438,266
Number of Sequences: 59808
Number of extensions: 705031
Number of successful extensions: 2059
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 41
length of query: 479
length of database: 16,821,457
effective HSP length: 85
effective length of query: 394
effective length of database: 11,737,777
effective search space: 4624684138
effective search space used: 4624684138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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