GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001717-TA|BGIBMGA001717-PA|IPR004457|Zinc finger,
ZPR1-type
         (479 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.041
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.2  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   8.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 29.9 bits (64), Expect = 0.041
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 158  RCERTDFKRSKAQNHQLGIFMHDEVQDDLT--PTPLTPFSEKLLTPADPAECSLEQMTAD 215
            RC    F   ++ N  LG+   +  ++D T  P P+TP   ++ T  D    S E M  D
Sbjct: 975  RCCGGSFPLLRSLNRGLGLIPDNPSREDCTKPPEPVTPAPPQVTTGVDTGASSTEHMHPD 1034


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 23  EECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEI------ 76
           +E      E++ GG +E   +R     E+ Q  N   +K   +    PE+ +E+      
Sbjct: 396 QESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWELYGRRLS 455

Query: 77  -AAQSQKGEVTTVEG 90
            + ++Q G+  TV G
Sbjct: 456 NSERNQIGQYVTVNG 470


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 418 PLTPDDGEPAGPSPYLAAPPGDPLS 442
           PLTP  G P+ P   ++     P+S
Sbjct: 116 PLTPSPGPPSHPYTVISNGYSSPMS 140


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 217 VLQFRTNCPDCNSPANTNMKITKIPH 242
           +LQF+ + P+  SP N+    T+ P+
Sbjct: 411 LLQFQISIPEEASPTNSTTITTQTPN 436


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 336 RHPGPAPALPCPHRGQRAATRPAAVRSDQTSRYKTSSS 373
           +H     A+  P  G+R A RP  V + +    + SS+
Sbjct: 26  QHQHYGAAVQVPQGGRRRAARPGVVTTPRWGCARASSA 63


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,010
Number of Sequences: 317
Number of extensions: 4743
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 479
length of database: 114,650
effective HSP length: 59
effective length of query: 420
effective length of database: 95,947
effective search space: 40297740
effective search space used: 40297740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)