Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001717-TA|BGIBMGA001717-PA|IPR004457|Zinc finger,
ZPR1-type
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0976 - 23222557-23222559,23223028-23223109,23223218-232232... 58 2e-08
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586... 32 0.87
10_02_0079 + 5016115-5016936 31 1.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 31 1.5
03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429 31 2.7
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 30 3.5
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 30 3.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 4.7
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 30 4.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 6.2
04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817... 29 6.2
03_03_0225 - 15587557-15588774 29 8.1
>08_02_0976 -
23222557-23222559,23223028-23223109,23223218-23223258,
23223362-23223406,23223498-23223641
Length = 104
Score = 57.6 bits (133), Expect = 2e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 210 EQMTADEVLQFRTNCPDCNSPANTNMKITKIPHFKEVVIMATTCDYCGHRTNEVKSGGGI 269
E+ A + + + C C T + +T IPHF+EVV+MA C +CG R NEV+ G +
Sbjct: 28 EEAHAAPLHEIESLCMRCGDNGTTRLLMTMIPHFREVVLMAFECPHCGERNNEVQFAGQL 87
Query: 270 EDMGVRFEVRV 280
+ G + + V
Sbjct: 88 QPKGCCYRLEV 98
Score = 57.2 bits (132), Expect = 3e-08
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 2 TRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQD 54
TR+L+T IPH++ VV+M+F C CG +NNE+Q G+ + G ++L V Q+
Sbjct: 51 TRLLMTMIPHFREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQN 103
>11_06_0297 +
22056644-22058212,22058316-22058423,22058513-22058678,
22059000-22059056,22059382-22059479,22059556-22059765,
22060469-22060582,22060819-22060948,22061165-22061298,
22062279-22062359,22062798-22062872,22063210-22063221
Length = 917
Score = 32.3 bits (70), Expect = 0.87
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 215 DEVLQFRTNCPDCNSPANTNMKITKIPHF 243
DE F NC C SP NT++ + PHF
Sbjct: 786 DEQSCFEANCEHCGSPKNTDVFPSNTPHF 814
>10_02_0079 + 5016115-5016936
Length = 273
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 104 ESRRSQHPDAAAKIDEFVSK-LQALKDLSTPWTLQL 138
E R Q+P AAK+DE K L+ + D+ T W+L+L
Sbjct: 208 EEMRVQYPRLAAKVDEMARKALEGVSDM-TAWSLEL 242
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 332 GPTARH-PGPAP--ALPCPHRGQRAATRPA 358
GP ARH PGPA P PH G+R+ PA
Sbjct: 55 GPAARHAPGPARHHGAPAPHPGRRSPPAPA 84
>03_06_0363 - 33385641-33386201,33386421-33386894,33387013-33387429
Length = 483
Score = 30.7 bits (66), Expect = 2.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 374 LVTYIIITRRFIERLTDVLELKEP--VTVVLDDPAGNSYVQSLADDPLTPDDGEPAGPSP 431
++ Y+ +++R R DV + P V+ + PAG S P+ P DG P G
Sbjct: 22 MIPYLELSKRLAARGHDVTFVSTPRNVSRLPPVPAGLSARLRFVSLPMPPVDGLPEGAES 81
Query: 432 YLAAPPGD 439
PPG+
Sbjct: 82 TADVPPGN 89
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 30.3 bits (65), Expect = 3.5
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 224 CPDCNSPANTNMKITKIPH-FKEVVIMATTCDYCGHRTNEVKSGGGIEDMGVRFEVRVAT 282
CP P + I H V T D G TNEV G ++ GVR V +AT
Sbjct: 29 CPAFEPPKPEADMVALIRHAIAAGVTFFDTSDLYGPHTNEVLLGKALQGGGVRDRVELAT 88
Query: 283 K 283
K
Sbjct: 89 K 89
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 70 PELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFVSKLQALKD 129
P+LD+E+ + + E +E ++ D++ S PD A+++EF + L+ K
Sbjct: 632 PDLDYEVDSDDEWEEGIQIESLLD--------DKDEASSSPPDQCAEVEEFRALLRQQKV 683
Query: 130 LST 132
L+T
Sbjct: 684 LNT 686
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 4.7
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 418 PLTPDDGEPAGPSPYLAAPPGDPLSFTINIISGLKVERYVRTFEQNEELGLNDMKTE 474
P P G+P GP P PP P S N+ G KV R E + L + K +
Sbjct: 930 PPPPPPGKPGGPPP----PPPPPGSLPRNLAGGDKVHRAPEVVEFYQSLMKREAKKD 982
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 29.9 bits (64), Expect = 4.7
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 338 PGPAPALPCPHRGQRAATRPAAVRSDQTSRYKTSSSLVTYIIITRRFIERLTDVLELKE 396
P P+P P P QR A A R +R SS+ + RFI R T ++ E
Sbjct: 147 PSPSPRPPTPAELQREAAMAARERRRIQARLNRSSTGAKRALKGLRFISRTTGTVQAAE 205
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.5 bits (63), Expect = 6.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 418 PLTPDDGEPAGPSPYLAAPPGDPLSFTINIISGLKVERYVRTFEQNEELGLNDMKTE 474
P P G+P GP P PP P S N+ G KV R E + L + K +
Sbjct: 625 PPPPPPGKPGGPPP----PPPRPGSLPRNLAGGDKVHRAPEVVEFYQSLMKREAKKD 677
>04_01_0622 -
8175226-8175312,8175674-8175763,8176370-8176457,
8177021-8177095,8177754-8177821,8177898-8177955,
8178862-8178942,8179968-8180038,8180144-8180225,
8182327-8182449,8183023-8183129,8183201-8183263,
8183877-8183936,8184100-8184151,8185566-8185598,
8185820-8185871,8185965-8186028,8186693-8186749,
8186962-8187006,8187083-8187190,8188147-8188212,
8188382-8188492,8190841-8191035,8191419-8191499,
8191591-8191630,8191764-8191816
Length = 669
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 58 QVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKI 117
QVV SD I +L+FE+ Q ++ + T + QD +S + + +++
Sbjct: 298 QVVGSDKLYKEIRDLNFEVVVQ-----------VLRQKATSIQQDYAEVKSTNTQSVSEL 346
Query: 118 DEFVSKLQALKDLS 131
+FV +L +L +++
Sbjct: 347 KDFVKRLHSLPEIA 360
>03_03_0225 - 15587557-15588774
Length = 405
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 336 RHPGPAPALPCPHRGQRAATRPAAVRSDQTSRYKTSSSLVTYI 378
R P P A+ PH AA+ PAA + ++ + T+ +Y+
Sbjct: 137 RRPPPPVAVAVPHAHPGAASHPAAPAAAESPEFWTACPFCSYV 179
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,820
Number of Sequences: 37544
Number of extensions: 631451
Number of successful extensions: 1970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1961
Number of HSP's gapped (non-prelim): 13
length of query: 479
length of database: 14,793,348
effective HSP length: 85
effective length of query: 394
effective length of database: 11,602,108
effective search space: 4571230552
effective search space used: 4571230552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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