Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001717-TA|BGIBMGA001717-PA|IPR004457|Zinc finger,
ZPR1-type
(479 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical ... 263 2e-70
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 29 5.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 9.5
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 9.5
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 29 9.5
AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical ... 29 9.5
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 9.5
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 9.5
>AF022981-1|AAG24206.1| 455|Caenorhabditis elegans Hypothetical
protein W03F9.1 protein.
Length = 455
Score = 263 bits (645), Expect = 2e-70
Identities = 125/300 (41%), Positives = 183/300 (61%), Gaps = 12/300 (4%)
Query: 2 TRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVK 61
TR++ T IP+Y+ V++MSF C CG++NNEIQ G +E G LRV+ +DL RQ+VK
Sbjct: 37 TRIMCTSIPYYRAVILMSFECPHCGHKNNEIQSGEAVQEHGTLIVLRVQKPEDLRRQLVK 96
Query: 62 SDYTSVRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFV 121
S+Y S+ +PEL EI +SQ GEVTTVEG++ R GL+QDQE RR P+ A++ID ++
Sbjct: 97 SEYASIEVPELQLEIPHKSQPGEVTTVEGVLERVHRGLSQDQEKRRLLDPEGASQIDAYL 156
Query: 122 SKLQALKDLSTPWTLQLEDISGNCFIENPQMPKKDPRCERTDFKRSKAQNHQLGIFMHDE 181
K+ + +L WTL+L D +GNC+I+NP + DPRC + + R+ + L + +E
Sbjct: 157 QKITSCMELGETWTLRLRDPTGNCYIQNPDVRHVDPRCIISHYHRNLDERKLLALADDNE 216
Query: 182 VQDDLTPTPLTPFSEKLLTPADPAECSLEQMTADEVLQFRTNCPDCNSPANTNMKITKIP 241
++++ P+ P E + EVL F T+CP+C+ P MK T IP
Sbjct: 217 EEEEVEPSAAAP------------EFKSYEDAKQEVLHFATDCPNCHGPTEVKMKPTDIP 264
Query: 242 HFKEVVIMATTCDYCGHRTNEVKSGGGIEDMGVRFEVRVATKDDFSRDILKIVNVVLHVP 301
F+ V+IM+ CD CG+++NEVKSGG I D G R V++ D +RD+LK L +P
Sbjct: 265 FFQTVIIMSLACDRCGYKSNEVKSGGAIRDQGCRMSVKLEKDLDLARDVLKTDTCALSIP 324
Score = 113 bits (271), Expect = 3e-25
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 7 TRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYTS 66
T IP ++ V+IMS +C+ CGY++NE++ GG + G R +++E DL R V+K+D +
Sbjct: 261 TDIPFFQTVIIMSLACDRCGYKSNEVKSGGAIRDQGCRMSVKLEKDLDLARDVLKTDTCA 320
Query: 67 VRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAK--IDEFVSKL 124
+ IPE+D E+ + G TT+EG+++ L+ K + F+ KL
Sbjct: 321 LSIPEIDLEVGGNALCGRFTTIEGLLTATKEQLDAQSSFFMGDSAQTGEKSAVTTFLEKL 380
Query: 125 QALKDLSTPWTLQLEDISGNCFIENPQMPKKDPRCERTDFKRSKAQNHQLGI 176
+ L P T+ L+D +G ++++ P DPR + + R+ QN +LGI
Sbjct: 381 DDIIALRLPATIILDDPTGCSYVQSLTAPMDDPRLTKEFYTRTYEQNDELGI 432
Score = 68.9 bits (161), Expect = 7e-12
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 224 CPDCNSPANTNMKITKIPHFKEVVIMATTCDYCGHRTNEVKSGGGIEDMGVRFEVRVATK 283
CP C T + T IP+++ V++M+ C +CGH+ NE++SG +++ G +RV
Sbjct: 28 CPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHKNNEIQSGEAVQEHGTLIVLRVQKP 87
Query: 284 DDFSRDILKIVNVVLHVPPTVGDVQHE 310
+D R ++K + VP ++ H+
Sbjct: 88 EDLRRQLVKSEYASIEVPELQLEIPHK 114
Score = 62.9 bits (146), Expect = 5e-10
Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 28/93 (30%)
Query: 384 FIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDPLTPDDGEPAGPSPYLAAPPGDPLSF 443
F+E+L D++ L+ P T++LDDP G SYVQS L AP DP
Sbjct: 376 FLEKLDDIIALRLPATIILDDPTGCSYVQS-------------------LTAPMDDP--- 413
Query: 444 TINIISGLKVERYVRTFEQNEELGLNDMKTENY 476
L E Y RT+EQN+ELG+NDMK ENY
Sbjct: 414 ------RLTKEFYTRTYEQNDELGINDMKVENY 440
Score = 32.3 bits (70), Expect = 0.78
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 384 FIERLTDVLELKEPVTVVLDDPAGNSYVQS 413
+++++T +EL E T+ L DP GN Y+Q+
Sbjct: 155 YLQKITSCMELGETWTLRLRDPTGNCYIQN 184
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 372 SSLVTYIIITRRFIERLTDVLELKEPVTVVLDDPAGNSYVQSLADDP 418
S ++TY + ++E+L D+ LK V DD G + ++ + +P
Sbjct: 386 SKVLTYDLRLFDYVEKLKDLSSLKNIVETTTDDVQGKAAIEKMKANP 432
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 136 LQLEDISGNCFIENPQMPKKDPRCERTDFKR---SKAQNHQLGIFMHDEVQDDLTPTPLT 192
++ D S + P KKD RC + + S + G M + D P P++
Sbjct: 1175 IKKSDFSSEYLQQVPVCIKKDARCVQQSYPPAADSVTTEAESGSNMDKSILGDKLPFPVS 1234
Query: 193 PFSEKLLTPADPAECSLE 210
E + P D A+ ++E
Sbjct: 1235 NSKEMRVVPLDDAQATVE 1252
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 136 LQLEDISGNCFIENPQMPKKDPRCERTDFKR---SKAQNHQLGIFMHDEVQDDLTPTPLT 192
++ D S + P KKD RC + + S + G M + D P P++
Sbjct: 1175 IKKSDFSSEYLQQVPVCIKKDARCVQQSYPPAADSVTTEAESGSNMDKSILGDKLPFPVS 1234
Query: 193 PFSEKLLTPADPAECSLE 210
E + P D A+ ++E
Sbjct: 1235 NSKEMRVVPLDDAQATVE 1252
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 28 QNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTT 87
Q+N P + E W+ R +++D N + K+ + + S++ + +T
Sbjct: 236 QDNRSDPEDDREAEAPNWRRRRRAKEDQNVKARKTKKVKKNEEVPSKKSSKMSKRSKRST 295
Query: 88 VEGIISRAITGLNQDQESRRSQHPDAAAKIDEF--VSKLQA 126
E + + + + +D E + S+ + KID +SKL+A
Sbjct: 296 DENLETAKSSRILKDSEPKSSRSSVTSQKIDSSRGMSKLRA 336
>AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical
protein T05A8.4 protein.
Length = 736
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 35 GGEYEELG-VR--WKLRVESQQDLNRQVVKSDYTSVRIPELDFEIAAQSQKGEVTTVEGI 91
G Y+ LG +R W S+ + Q ++ Y+S + +++ +I +S KGE G
Sbjct: 581 GRLYDNLGNIRQWWDNATISKFEHKAQCIEKQYSSYVLDQINMQINGKSTKGENIADNGG 640
Query: 92 ISRAITGLNQDQESRRSQHP 111
+ +A + E R S+ P
Sbjct: 641 LKQAYRAYKK-YEKRHSRPP 659
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 136 LQLEDISGNCFIENPQMPKKDPRCERTDFKR---SKAQNHQLGIFMHDEVQDDLTPTPLT 192
++ D S + P KKD RC + + S + G M + D P P++
Sbjct: 1175 IKKSDFSSEYLQQVPVCIKKDARCVQQSYPPAADSVTTEAESGSNMDKSILGDKLPFPVS 1234
Query: 193 PFSEKLLTPADPAECSLE 210
E + P D A+ ++E
Sbjct: 1235 NSKEMRVVPLDDAQATVE 1252
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 136 LQLEDISGNCFIENPQMPKKDPRCERTDFKR---SKAQNHQLGIFMHDEVQDDLTPTPLT 192
++ D S + P KKD RC + + S + G M + D P P++
Sbjct: 1175 IKKSDFSSEYLQQVPVCIKKDARCVQQSYPPAADSVTTEAESGSNMDKSILGDKLPFPVS 1234
Query: 193 PFSEKLLTPADPAECSLE 210
E + P D A+ ++E
Sbjct: 1235 NSKEMRVVPLDDAQATVE 1252
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,007
Number of Sequences: 27539
Number of extensions: 533393
Number of successful extensions: 1522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1513
Number of HSP's gapped (non-prelim): 13
length of query: 479
length of database: 12,573,161
effective HSP length: 84
effective length of query: 395
effective length of database: 10,259,885
effective search space: 4052654575
effective search space used: 4052654575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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