Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001715-TA|BGIBMGA001715-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (517 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      40   5e-05
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.093
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    27   0.28 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    27   0.28 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   6.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 39.9 bits (89), Expect = 5e-05
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 162 DVELIGAGWSLAAHRAVLAARSHYFRDLLRGRPPGFCRVPLEGAGASLSREELVAGVRML 221
           DV L   G SL AHR VL+A S YFR+LL+  P   C+ P+      ++  +L A V  +
Sbjct: 33  DVTLACDGRSLKAHRVVLSACSPYFRELLKSTP---CKHPVI-VLQDVAFSDLHALVEFI 88

Query: 222 YSGPLYCH 229
           Y G +  H
Sbjct: 89  YHGEVNVH 96


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.093
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 162 DVELIGAGWSLAAHRAVLAARSHYFRDLLRGRP 194
           DV L     SL AH+ VL+A S YF+ LL   P
Sbjct: 37  DVTLACNEASLKAHKVVLSACSSYFQKLLLSNP 69


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 0.28
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 278 RRFAKALLHAAYTDQPNLVWHTAHSASRRGTRRREL 313
           R F + LLH A  D P LV    H   R  ++R+E+
Sbjct: 125 RTFLRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEV 160


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 0.28
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 278 RRFAKALLHAAYTDQPNLVWHTAHSASRRGTRRREL 313
           R F + LLH A  D P LV    H   R  ++R+E+
Sbjct: 93  RTFLRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEV 128


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 481 RDRTKTTPRPAGTVETS-PHVSLALSKTD 508
           RDR KT+ RP  T+ET    +SL+L   D
Sbjct: 322 RDRNKTSARPT-TIETRVTPLSLSLKLLD 349


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,559
Number of Sequences: 429
Number of extensions: 4142
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 517
length of database: 140,377
effective HSP length: 61
effective length of query: 456
effective length of database: 114,208
effective search space: 52078848
effective search space used: 52078848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)