Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001715-TA|BGIBMGA001715-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ...    34   0.26 
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter...    31   1.4  
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai...    31   1.4  
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai...    31   1.4  
At2g40450.1 68415.m04992 speckle-type POZ protein-related contai...    31   1.8  
At1g08035.1 68414.m00877 expressed protein ; expression supporte...    30   3.2  
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai...    29   5.6  

>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 586

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 160 WCDVELIGAGWSLAAHRAVLAARSHYFRDLLR 191
           + D E+I  G  +  HR +LAARS +F+DL +
Sbjct: 59  YSDAEIIVDGVPVGVHRCILAARSKFFQDLFK 90


>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 329

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 160 WCDVELIGAGWSLAAHRAVLAARSHYFRDL 189
           + D+ +  +  S+ AHRAVLAARS  FR +
Sbjct: 163 YTDITINASDGSIGAHRAVLAARSPVFRSM 192


>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 172 LAAHRAVLAARSHYFRDLLRGRPPGFCRV-PLEGAG-ASLSREELVAGVRMLYSGPL 226
           +  H+AVLAARS  FR++L       C+  P E      LS +EL + +  LYSG L
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDE---CKTSPEESITLPDLSHDELKSLLEFLYSGNL 90


>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 172 LAAHRAVLAARSHYFRDLLRGRPPGFCRV-PLEGAG-ASLSREELVAGVRMLYSGPL 226
           +  H+AVLAARS  FR++L       C+  P E      LS +EL + +  LYSG L
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDE---CKTSPEESITLPDLSHDELKSLLEFLYSGNL 90


>At2g40450.1 68415.m04992 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 209

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 171 SLAAHRAVLAARSHYFRDLLRGRPPGFCRVPLEGAGAS-LSREELVAGVRMLYSGPLYCH 229
           S+ AH+ VL ARS  F+ +L           +E    S +  EEL A V  +Y   +   
Sbjct: 38  SIFAHKLVLVARSEVFKKILESDEFKASSKQMETVTLSEMKHEELEAFVEFIYR--VDGS 95

Query: 230 TCHTGCGTHVDS---SASCTFAPFLTALYRNVMGRRTSSNGAICVDEKILPRRFAKALLH 286
            C      H  S   +A     P L  L RN +    +S+ A+ + E +    F KAL  
Sbjct: 96  ICSASLKKHARSLFHAADKYEIPHLRDLCRNELISSLNSSNALSILE-LAQIPFDKALND 154

Query: 287 AAYT 290
            A+T
Sbjct: 155 PAFT 158


>At1g08035.1 68414.m00877 expressed protein ; expression supported
           by MPSS
          Length = 111

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 210 SREELVAGV-RMLYSGPLYCHTCHTGCGTHVDSSASCTFAPF-LTALYRNV 258
           S EE++  + + ++S  L   T  +G G+H   SA+C  AP  LT L RN+
Sbjct: 52  SDEEIIESLYQNIFSIVLCLQTEESGYGSHTPVSAACPGAPMKLTKLSRNI 102


>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 415

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 162 DVELIGAGWSLAAHRAVLAARSHYFRDL 189
           DV    AG    AH+ VLAARS +FR +
Sbjct: 206 DVTFDVAGEKFQAHKLVLAARSQFFRSM 233


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,285
Number of Sequences: 28952
Number of extensions: 389223
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 7
length of query: 517
length of database: 12,070,560
effective HSP length: 84
effective length of query: 433
effective length of database: 9,638,592
effective search space: 4173510336
effective search space used: 4173510336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)