GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001715-TA|BGIBMGA001715-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    28   2.7  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   8.3  

>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 229 HTCHTGCGTHVDSSASCTFAPFLTALYRNVMGRRTSSNGAICVDEKILPRRF 280
           H C +G  T +D S+      +  ++ R V  R+T    ++C+ + ++ R+F
Sbjct: 32  HNCGSGVKTIMDKSSIFLKNRYPISINRFVQQRKTFCGASVCLHKVLVQRQF 83


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 96  DRGCEHGRYIRSVVGDWQLPEVVVLCEEMEA 126
           DRG    +Y+R  V  WQ+P ++   E  ++
Sbjct: 730 DRGHLPAQYLRQSVATWQIPNLISAIEAYDS 760


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,276
Number of Sequences: 5004
Number of extensions: 66939
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 2
length of query: 517
length of database: 2,362,478
effective HSP length: 76
effective length of query: 441
effective length of database: 1,982,174
effective search space: 874138734
effective search space used: 874138734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)