GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001714-TA|BGIBMGA001714-PA|IPR000418|Ets
         (314 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 161 DAARRVEPDRPRQPAARHHYT 181
           D  RR EP RPR    RH  T
Sbjct: 322 DHQRRNEPKRPRPNIDRHEVT 342


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
          protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 33 HAHTHAPPH 41
          H H+H PPH
Sbjct: 51 HHHSHMPPH 59


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
          protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 33 HAHTHAPPH 41
          H H+H PPH
Sbjct: 51 HHHSHMPPH 59


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 57 PHACGIPFSKCNEDEEAREEP 77
          PH   +P   CNE      +P
Sbjct: 45 PHPAALPIEGCNETGFINSQP 65


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 57 PHACGIPFSKCNEDEEAREEP 77
          PH   +P   CNE      +P
Sbjct: 45 PHPAALPIEGCNETGFINSQP 65


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,161
Number of Sequences: 317
Number of extensions: 3008
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 314
length of database: 114,650
effective HSP length: 57
effective length of query: 257
effective length of database: 96,581
effective search space: 24821317
effective search space used: 24821317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)