GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001714-TA|BGIBMGA001714-PA|IPR000418|Ets
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531...    31   1.2  
02_03_0090 - 15100386-15100414,15100740-15100827,15101025-151010...    31   1.2  
10_01_0110 + 1360699-1360873,1361301-1361524                           29   3.7  
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961     29   3.7  
06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117           29   4.8  
05_05_0337 - 24176184-24176858                                         29   6.4  
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320...    28   8.5  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   8.5  

>02_05_0761 -
           31550936-31551020,31551641-31552666,31553083-31553117,
           31554921-31555039,31555215-31555331,31556131-31556205,
           31556885-31557017
          Length = 529

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 2   SQQPHALPWSLHYQYRECGGSLAPCRESFYEHAHTHAPPHLYRTHTHAPPDGQTQPHACG 61
           +QQ + +PW L +   E GG+ A   E+ +          +Y  + H   +G+ Q    G
Sbjct: 447 TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGELQRLVAG 506

Query: 62  I 62
           I
Sbjct: 507 I 507


>02_03_0090 -
          15100386-15100414,15100740-15100827,15101025-15101078,
          15101184-15101243,15101352-15101462,15103213-15103287,
          15103845-15103901
          Length = 157

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 45 THTHAPPDGQTQPHACGIPF 64
          +H HA PD Q QPH   +PF
Sbjct: 53 SHQHAGPDDQCQPHVLTVPF 72


>10_01_0110 + 1360699-1360873,1361301-1361524
          Length = 132

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 150 AHCTGKQLAVCDAARRVEPDRPRQPAAR 177
           AHC+G++L  C    R  P R ++P  R
Sbjct: 36  AHCSGRRLGRCRVQGRASPQRRQEPHRR 63


>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
          Length = 221

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 165 RVEPDRPRQPAAR--HHYTFRYTHSVPARGVAVSRKAVDLGRQLILFTRGGVTLQV 218
           RV+ D  R+ A R  H   F    +V  RG+ V R+A  LGR   L     V L +
Sbjct: 102 RVDLDAKRRRALRVGHDEAFSPKRTVSCRGLGVRRRAAFLGRNRTLSVSAEVRLML 157


>06_01_0378 - 2717010-2717565,2718165-2718229,2718365-2719117
          Length = 457

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 167 EPDRPRQPAARHHYTFRYTHSV--PARGVAVSRKAVDLGRQLILF 209
           +P    +PAA     FRY H    P RG  ++R+AV+ GR+   F
Sbjct: 50  KPATGGEPAASCPDYFRYIHDDLRPWRGAGITREAVERGRRHAYF 94


>05_05_0337 - 24176184-24176858
          Length = 224

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 33 HAHTHAPPHLYRT-HTHAPPDGQTQPHACGIPFSKCNEDEEAREEPVSSSEPHHRWDEK 90
          H HT  PP    T HTH      TQ  A G       ED      P+ + E   ++ EK
Sbjct: 31 HTHTCNPPGPSATMHTHTCLHTHTQVFASGSGEDDIKEDLTKTRRPLGNREAVRKYREK 89


>07_03_1775 +
           29431106-29431193,29431290-29431329,29431620-29432080,
           29432173-29432363,29432503-29432635,29432839-29433428
          Length = 500

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 34  AHTHAPPHLYRTHTHAPPDGQTQPHACGIPFSKCNEDEEAREEPV---SSSEPHHRWDEK 90
           AHT AP           P     P A  IP S      +A   P    + ++P H W   
Sbjct: 91  AHTPAPSPAPSPSPFTAPPKSASPAAITIPISPSTPQPKAESNPAVEDAPAQPRHSW-RN 149

Query: 91  LGLI 94
            GL+
Sbjct: 150 YGLV 153


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 128 DAAVSFEVIVSIILYTIEPDYTAHCTGK--QLAVCDAARRVEPDRPRQP 174
           D   S+E  + + L+  E +Y AH  GK  Q  +   A R   D P QP
Sbjct: 77  DFVSSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQP 125


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,411,925
Number of Sequences: 37544
Number of extensions: 375186
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 8
length of query: 314
length of database: 14,793,348
effective HSP length: 82
effective length of query: 232
effective length of database: 11,714,740
effective search space: 2717819680
effective search space used: 2717819680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)