BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001713-TA|BGIBMGA001713-PA|IPR001611|Leucine-rich repeat, IPR003591|Leucine-rich repeat, typical subtype (395 letters) Database: bee 429 sequences; 140,377 total letters Searching.....................................................done Score E Sequences producing significant alignments: (bits) Value AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 85 1e-18 DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.37 AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 4.5 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 6.0 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 6.0 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 6.0 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 6.0 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 85.0 bits (201), Expect = 1e-18 Identities = 71/272 (26%), Positives = 116/272 (42%), Gaps = 6/272 (2%) Query: 104 KNAINPLNADAFKGLGITALMMFNAGAQT--TVPVDVLRSLPKLTHFRLNAGRNITLHAN 161 +NAI + DA GL T L FNA + ++P + S L L L Sbjct: 246 RNAIVEIAGDALTGL--TVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKG 303 Query: 162 MFANTPPLKYLELSDAKITV--LPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTV 219 +F L L L+ ++ + + FLGL L LN+ N + +I A F+ L + + Sbjct: 304 IFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQI 363 Query: 220 LSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLK 279 L L N I + + F L L + N R + ++ F GL + + +S N ++ Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASID 423 Query: 280 EAVFSNLPALRTLQLDLSSIRELPEEFISNSPLRTLSLARNQLRVLPRSVLRGQTQLTSL 339 F N L+ L L + + +P+ + L+TL L N++ R QLT L Sbjct: 424 PLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGL 483 Query: 340 TLSYNAVAELAPELFADLRALETFVMDGNELQ 371 L N + L+ + DL L+ + N++Q Sbjct: 484 RLIGNDIGNLSRGMLWDLPNLQILNLARNKVQ 515 Score = 82.2 bits (194), Expect = 7e-18 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 3/247 (1%) Query: 105 NAINPLNADAFKGLGITALMMFNAGAQTTVPVDVLRSLPKLTHFRLNAGRNITLHANMFA 164 N+I+ + ++AF L + + TV + L L L+ ++ F Sbjct: 369 NSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFR 428 Query: 165 NTPPLKYLELSDAKITVLPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNK 224 N LK L+LS ++T +PD A L +L+ L++ EN I+N G+FR L +T L L Sbjct: 429 NCSDLKELDLSGNELTSVPD-ALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487 Query: 225 NRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFS 284 N I L G+ P L L + RN ++++ F ++ I++ N L+ VF+ Sbjct: 488 NDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNF-LSDINGVFT 546 Query: 285 NLPALRTLQLDLSSIRELPEEFISNSPLRTLSLARNQLRVLPRSVLRGQTQLTSLTLSYN 344 ++ +L L L + I FI + L+ L + N + L +++ +L S+N Sbjct: 547 SIASLLLLNLSENHIEWFDYAFIPGN-LKWLDIHGNFIESLGNYYKIRDSKVKTLDASHN 605 Query: 345 AVAELAP 351 + EL+P Sbjct: 606 RITELSP 612 Score = 74.5 bits (175), Expect = 1e-15 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 28/230 (12%) Query: 169 LKYLELSDAKITVLPDDA-FLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRI 227 ++ L+LS +IT L +++ L L L++L++ N I I A GL + + + N + Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273 Query: 228 QALPAGLFASTPRLLNLTMMRNSFRYL--------------------------DSETFRG 261 +LP GLFAST L + + N R L D TF G Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLG 333 Query: 262 LDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEE-FISNSPLRTLSLARN 320 L + + +S N+ + +F +L L+ L L +SI + F+ L TL L+ N Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393 Query: 321 QLRVLPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNEL 370 +LR + + G L LTLS NA+A + P F + L+ + GNEL Sbjct: 394 KLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443 Score = 64.9 bits (151), Expect = 1e-12 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 7/247 (2%) Query: 131 QTTVPVDVLRSLPKLTHFRLNAGRNITLHANMFANTPPLKYLELSDAKITVLPDDAFLGL 190 Q P+ LR L +L H + NA + + + L+ S + LP+ F Sbjct: 228 QENSPLLDLRQLQEL-HLQRNA--IVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFAST 284 Query: 191 NVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRI--QALPAGLFASTPRLLNLTMMR 248 L ++++ N + ++ G F L + VL+L NR+ + F RL+ L + Sbjct: 285 RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSY 344 Query: 249 NSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEEFIS 308 N ++D+ F+ L +Q + + NN ++ F L L TL+L + +R + + + Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFN 404 Query: 309 N-SPLRTLSLARNQLRVLPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDG 367 L L+L+ N + + R + L L LS N + + P+ DL L+T + Sbjct: 405 GLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV-PDALRDLALLKTLDLGE 463 Query: 368 NELQVGY 374 N + Y Sbjct: 464 NRISNFY 470 Score = 58.8 bits (136), Expect = 7e-11 Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 25/257 (9%) Query: 139 LRSLPKLTHFRLN----AGRNITLHANMFANTPPLKYLELSDAKITVLPDDAFLGLNVLE 194 L L KLT N A R + L + F L LE+ ++ + LP ++ L+ L+ Sbjct: 115 LLELKKLTVQTFNSVWGASRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQ 174 Query: 195 QLNVWENEIANIT-AGAFRG----------------LHNVTVLSLNKNRIQALPAGL-FA 236 LN+ EN + +I G R ++ +L L++N I L Sbjct: 175 TLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPLL 234 Query: 237 STPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDL 296 +L L + RN+ + + GL ++ S N +L E +F++ LR + L Sbjct: 235 DLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAY 294 Query: 297 SSIRELPEE-FISNSPLRTLSLARNQLRV--LPRSVLRGQTQLTSLTLSYNAVAELAPEL 353 + +R+LP+ F L L+LA N+L + + G +L L LSYN + + + Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARM 354 Query: 354 FADLRALETFVMDGNEL 370 F DL L+ + N + Sbjct: 355 FKDLFFLQILDLRNNSI 371 Score = 49.2 bits (112), Expect = 6e-08 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 18/225 (8%) Query: 157 TLHANMFANTPPLKYLELSDAKITVLPDDAFLGLNVLEQL------NVW-ENEIANITAG 209 + +A + L L + K+ +P+ AF L L++L +VW + + Sbjct: 82 SFNAQSWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPD 141 Query: 210 AFRGLHNVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIK 269 +F GL + L + ++ +QALP S L L + N R ++ GL+ Sbjct: 142 SFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDI---GLNRRDSDD 198 Query: 270 ISNNVPLTLKEAVFSNLPA-LRTLQLDLSSIRELPEE--FISNSPLRTLSLARNQLRVLP 326 S+ + S+ A +R L L + I L E + L+ L L RN + + Sbjct: 199 GSDG-----NDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIA 253 Query: 327 RSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQ 371 L G T L + SYN++ L LFA R L + N L+ Sbjct: 254 GDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298 Score = 42.3 bits (95), Expect = 7e-06 Identities = 26/92 (28%), Positives = 44/92 (47%) Query: 182 LPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRIQALPAGLFASTPRL 241 L + F+G + L V + I +I F GL+N+ +L L NRI+ L F L Sbjct: 809 LQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHL 868 Query: 242 LNLTMMRNSFRYLDSETFRGLDHIQEIKISNN 273 L + N ++ + TF L ++ +++S N Sbjct: 869 RELYLQNNLIGFIGNLTFLPLRSLEILRLSGN 900 Score = 39.5 bits (88), Expect = 5e-05 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 201 NEIANITAGAFRGLHNVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFR 260 N + + F G N+ VL +N + I+++ F L L + N R L F Sbjct: 804 NVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 863 Query: 261 GLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPE-EFISNSPLRTLSLAR 319 L H++E+ + NN+ + F L +L L+L + + P + N+ L LSL Sbjct: 864 RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGS 923 Query: 320 N 320 N Sbjct: 924 N 924 Score = 36.3 bits (80), Expect = 5e-04 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 216 NVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVP 275 + T + L+ N ++ L +F + L + + + + TF GL+++Q + + +N Sbjct: 795 DATEVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRI 854 Query: 276 LTLKEAVFSNLPALRTLQLDLSSIRELPE-EFISNSPLRTLSLARNQLRVLPRSVLRGQT 334 LK F L LR L L + I + F+ L L L+ N+L P + Sbjct: 855 RELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNA 914 Query: 335 QLTSLTLSYN 344 +L L+L N Sbjct: 915 RLVELSLGSN 924 >DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride channel protein. Length = 428 Score = 26.6 bits (56), Expect = 0.37 Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 157 TLHANMFANTPPLKYLELSDAKITVLPDDAFLGL 190 T HA A+ PP+ YL+ DA ++V F+ L Sbjct: 289 TQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMAL 322 >AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly protein 8 protein. Length = 416 Score = 23.0 bits (47), Expect = 4.5 Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 225 NRIQALPAGLFASTPRLLNLTMMRNSF 251 N Q L + FAS PR T+ SF Sbjct: 219 NSFQRLTSSTFASDPRYTTFTINGESF 245 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 22.6 bits (46), Expect = 6.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 332 GQTQLTSLTLSYNAVAELAPEL 353 G T L SLT+ N VAE P++ Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 22.6 bits (46), Expect = 6.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 332 GQTQLTSLTLSYNAVAELAPEL 353 G T L SLT+ N VAE P++ Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 22.6 bits (46), Expect = 6.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 332 GQTQLTSLTLSYNAVAELAPEL 353 G T L SLT+ N VAE P++ Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 22.6 bits (46), Expect = 6.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 332 GQTQLTSLTLSYNAVAELAPEL 353 G T L SLT+ N VAE P++ Sbjct: 297 GVTILLSLTVFLNLVAETLPQV 318 Database: bee Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 140,377 Number of sequences in database: 429 Lambda K H 0.320 0.135 0.392 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 103,986 Number of Sequences: 429 Number of extensions: 4323 Number of successful extensions: 43 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 16 length of query: 395 length of database: 140,377 effective HSP length: 59 effective length of query: 336 effective length of database: 115,066 effective search space: 38662176 effective search space used: 38662176 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 45 (22.2 bits)
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