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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001713-TA|BGIBMGA001713-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (395 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    85   1e-18
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.37 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   6.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   6.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 85.0 bits (201), Expect = 1e-18
 Identities = 71/272 (26%), Positives = 116/272 (42%), Gaps = 6/272 (2%)

Query: 104 KNAINPLNADAFKGLGITALMMFNAGAQT--TVPVDVLRSLPKLTHFRLNAGRNITLHAN 161
           +NAI  +  DA  GL  T L  FNA   +  ++P  +  S   L    L       L   
Sbjct: 246 RNAIVEIAGDALTGL--TVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKG 303

Query: 162 MFANTPPLKYLELSDAKITV--LPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTV 219
           +F     L  L L+  ++    + +  FLGL  L  LN+  N + +I A  F+ L  + +
Sbjct: 304 IFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQI 363

Query: 220 LSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLK 279
           L L  N I  + +  F     L  L +  N  R + ++ F GL  +  + +S N   ++ 
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASID 423

Query: 280 EAVFSNLPALRTLQLDLSSIRELPEEFISNSPLRTLSLARNQLRVLPRSVLRGQTQLTSL 339
              F N   L+ L L  + +  +P+     + L+TL L  N++        R   QLT L
Sbjct: 424 PLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGL 483

Query: 340 TLSYNAVAELAPELFADLRALETFVMDGNELQ 371
            L  N +  L+  +  DL  L+   +  N++Q
Sbjct: 484 RLIGNDIGNLSRGMLWDLPNLQILNLARNKVQ 515



 Score = 82.2 bits (194), Expect = 7e-18
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 3/247 (1%)

Query: 105 NAINPLNADAFKGLGITALMMFNAGAQTTVPVDVLRSLPKLTHFRLNAGRNITLHANMFA 164
           N+I+ + ++AF  L     +  +     TV   +   L  L    L+     ++    F 
Sbjct: 369 NSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFR 428

Query: 165 NTPPLKYLELSDAKITVLPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNK 224
           N   LK L+LS  ++T +PD A   L +L+ L++ EN I+N   G+FR L  +T L L  
Sbjct: 429 NCSDLKELDLSGNELTSVPD-ALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487

Query: 225 NRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFS 284
           N I  L  G+    P L  L + RN  ++++   F     ++ I++  N  L+    VF+
Sbjct: 488 NDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNF-LSDINGVFT 546

Query: 285 NLPALRTLQLDLSSIRELPEEFISNSPLRTLSLARNQLRVLPRSVLRGQTQLTSLTLSYN 344
           ++ +L  L L  + I      FI  + L+ L +  N +  L        +++ +L  S+N
Sbjct: 547 SIASLLLLNLSENHIEWFDYAFIPGN-LKWLDIHGNFIESLGNYYKIRDSKVKTLDASHN 605

Query: 345 AVAELAP 351
            + EL+P
Sbjct: 606 RITELSP 612



 Score = 74.5 bits (175), Expect = 1e-15
 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 28/230 (12%)

Query: 169 LKYLELSDAKITVLPDDA-FLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRI 227
           ++ L+LS  +IT L +++  L L  L++L++  N I  I   A  GL  +   + + N +
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273

Query: 228 QALPAGLFASTPRLLNLTMMRNSFRYL--------------------------DSETFRG 261
            +LP GLFAST  L  + +  N  R L                          D  TF G
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLG 333

Query: 262 LDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEE-FISNSPLRTLSLARN 320
           L  +  + +S N+   +   +F +L  L+ L L  +SI  +    F+    L TL L+ N
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDN 393

Query: 321 QLRVLPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNEL 370
           +LR +   +  G   L  LTLS NA+A + P  F +   L+   + GNEL
Sbjct: 394 KLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443



 Score = 64.9 bits (151), Expect = 1e-12
 Identities = 59/247 (23%), Positives = 107/247 (43%), Gaps = 7/247 (2%)

Query: 131 QTTVPVDVLRSLPKLTHFRLNAGRNITLHANMFANTPPLKYLELSDAKITVLPDDAFLGL 190
           Q   P+  LR L +L H + NA   + +  +       L+    S   +  LP+  F   
Sbjct: 228 QENSPLLDLRQLQEL-HLQRNA--IVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFAST 284

Query: 191 NVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRI--QALPAGLFASTPRLLNLTMMR 248
             L ++++  N + ++  G F  L  + VL+L  NR+    +    F    RL+ L +  
Sbjct: 285 RDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSY 344

Query: 249 NSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPEEFIS 308
           N   ++D+  F+ L  +Q + + NN    ++   F  L  L TL+L  + +R +  +  +
Sbjct: 345 NMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFN 404

Query: 309 N-SPLRTLSLARNQLRVLPRSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDG 367
               L  L+L+ N +  +     R  + L  L LS N +  + P+   DL  L+T  +  
Sbjct: 405 GLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV-PDALRDLALLKTLDLGE 463

Query: 368 NELQVGY 374
           N +   Y
Sbjct: 464 NRISNFY 470



 Score = 58.8 bits (136), Expect = 7e-11
 Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 25/257 (9%)

Query: 139 LRSLPKLTHFRLN----AGRNITLHANMFANTPPLKYLELSDAKITVLPDDAFLGLNVLE 194
           L  L KLT    N    A R + L  + F     L  LE+ ++ +  LP ++   L+ L+
Sbjct: 115 LLELKKLTVQTFNSVWGASRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQ 174

Query: 195 QLNVWENEIANIT-AGAFRG----------------LHNVTVLSLNKNRIQALPAGL-FA 236
            LN+ EN + +I   G  R                   ++ +L L++N I  L       
Sbjct: 175 TLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPLL 234

Query: 237 STPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDL 296
              +L  L + RN+   +  +   GL  ++    S N   +L E +F++   LR + L  
Sbjct: 235 DLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAY 294

Query: 297 SSIRELPEE-FISNSPLRTLSLARNQLRV--LPRSVLRGQTQLTSLTLSYNAVAELAPEL 353
           + +R+LP+  F     L  L+LA N+L    +  +   G  +L  L LSYN +  +   +
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARM 354

Query: 354 FADLRALETFVMDGNEL 370
           F DL  L+   +  N +
Sbjct: 355 FKDLFFLQILDLRNNSI 371



 Score = 49.2 bits (112), Expect = 6e-08
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 18/225 (8%)

Query: 157 TLHANMFANTPPLKYLELSDAKITVLPDDAFLGLNVLEQL------NVW-ENEIANITAG 209
           + +A  +     L  L +   K+  +P+ AF  L  L++L      +VW  +    +   
Sbjct: 82  SFNAQSWQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPD 141

Query: 210 AFRGLHNVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIK 269
           +F GL  +  L + ++ +QALP     S   L  L +  N  R ++     GL+      
Sbjct: 142 SFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDI---GLNRRDSDD 198

Query: 270 ISNNVPLTLKEAVFSNLPA-LRTLQLDLSSIRELPEE--FISNSPLRTLSLARNQLRVLP 326
            S+       +   S+  A +R L L  + I  L E    +    L+ L L RN +  + 
Sbjct: 199 GSDG-----NDGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIA 253

Query: 327 RSVLRGQTQLTSLTLSYNAVAELAPELFADLRALETFVMDGNELQ 371
              L G T L +   SYN++  L   LFA  R L    +  N L+
Sbjct: 254 GDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298



 Score = 42.3 bits (95), Expect = 7e-06
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query: 182 LPDDAFLGLNVLEQLNVWENEIANITAGAFRGLHNVTVLSLNKNRIQALPAGLFASTPRL 241
           L +  F+G   +  L V  + I +I    F GL+N+ +L L  NRI+ L    F     L
Sbjct: 809 LQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHL 868

Query: 242 LNLTMMRNSFRYLDSETFRGLDHIQEIKISNN 273
             L +  N   ++ + TF  L  ++ +++S N
Sbjct: 869 RELYLQNNLIGFIGNLTFLPLRSLEILRLSGN 900



 Score = 39.5 bits (88), Expect = 5e-05
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 201 NEIANITAGAFRGLHNVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFR 260
           N +  +    F G  N+ VL +N + I+++    F     L  L +  N  R L    F 
Sbjct: 804 NVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 863

Query: 261 GLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLSSIRELPE-EFISNSPLRTLSLAR 319
            L H++E+ + NN+   +    F  L +L  L+L  + +   P  +   N+ L  LSL  
Sbjct: 864 RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGS 923

Query: 320 N 320
           N
Sbjct: 924 N 924



 Score = 36.3 bits (80), Expect = 5e-04
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 216 NVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRNSFRYLDSETFRGLDHIQEIKISNNVP 275
           + T + L+ N ++ L   +F     +  L +  +    + + TF GL+++Q + + +N  
Sbjct: 795 DATEVYLDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRI 854

Query: 276 LTLKEAVFSNLPALRTLQLDLSSIRELPE-EFISNSPLRTLSLARNQLRVLPRSVLRGQT 334
             LK   F  L  LR L L  + I  +    F+    L  L L+ N+L   P   +    
Sbjct: 855 RELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNA 914

Query: 335 QLTSLTLSYN 344
           +L  L+L  N
Sbjct: 915 RLVELSLGSN 924


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 157 TLHANMFANTPPLKYLELSDAKITVLPDDAFLGL 190
           T HA   A+ PP+ YL+  DA ++V     F+ L
Sbjct: 289 TQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMAL 322


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 225 NRIQALPAGLFASTPRLLNLTMMRNSF 251
           N  Q L +  FAS PR    T+   SF
Sbjct: 219 NSFQRLTSSTFASDPRYTTFTINGESF 245


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 332 GQTQLTSLTLSYNAVAELAPEL 353
           G T L SLT+  N VAE  P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 332 GQTQLTSLTLSYNAVAELAPEL 353
           G T L SLT+  N VAE  P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 332 GQTQLTSLTLSYNAVAELAPEL 353
           G T L SLT+  N VAE  P++
Sbjct: 229 GVTILLSLTVFLNLVAETLPQV 250


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 332 GQTQLTSLTLSYNAVAELAPEL 353
           G T L SLT+  N VAE  P++
Sbjct: 297 GVTILLSLTVFLNLVAETLPQV 318


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,986
Number of Sequences: 429
Number of extensions: 4323
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 16
length of query: 395
length of database: 140,377
effective HSP length: 59
effective length of query: 336
effective length of database: 115,066
effective search space: 38662176
effective search space used: 38662176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)

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