Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001711-TA|BGIBMGA001711-PA|IPR013766|Thioredoxin domain,
IPR012336|Thioredoxin-like fold
(215 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 9e-28
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36) 29 2.9
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 29 3.9
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 5.1
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 28 5.1
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 28 5.1
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 28 6.8
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6) 28 6.8
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 27 9.0
>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 120 bits (289), Expect = 9e-28
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Query: 4 VDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEY 63
+ + + Q VE Q+D+E+ RL+ + +LE +R++R+ +MK +QKQEW+ GHG Y
Sbjct: 5 IGRTVLQATQMVEEQVDAELNRLEKMTGDELEELREKRMQQMKKMQQQKQEWVHKGHGTY 64
Query: 64 TEIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPF 123
+EI E +FF + S +V HFY+ ++ RCKIVD HL +LA KH+ET+FVK+D P
Sbjct: 65 SEIPSEPDFFPMTKDSPRLVVHFYRDETFRCKIVDKHLALLAPKHMETKFVKID----PT 120
Query: 124 LTGRLKIRVIPTLGLVK 140
+++I T L+K
Sbjct: 121 KRAASSVKIIYTKKLLK 137
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 30.7 bits (66), Expect = 0.96
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 1 MANVDQLLQHVAQNVE--RQIDSEIERL-DALESGDLEAIRQQRIAEMKLRAKQKQEWLA 57
MA+ DQL HV Q ++ + + +I ++ + L GDL +R+Q + L K + +A
Sbjct: 246 MASQDQLQDHVGQTIKEIKHLRMKIHKVSEVLCHGDLNLLRKQSLRSKYLSVYDKLKLMA 305
Query: 58 IGH 60
H
Sbjct: 306 TVH 308
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 5 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEYT 64
+ L + +E +I + ER LES + A+ Q E++ R K+K+E L + + + +
Sbjct: 1426 ESALAAASSKIEEKIANFSERETELES-QVRALESQ-CEELEYRVKEKEESLLLANEKLS 1483
Query: 65 EIDGE 69
E D E
Sbjct: 1484 EKDAE 1488
>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
Length = 436
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 166 EWRIARSEAIEYSGDLLVPPSEAKKQKSLHIQSKKTIRGRDES 208
+WR+A +++ +L + + +++SLHI+ K ++ D S
Sbjct: 114 KWRLANGSSLKEETELQLELDKLDRERSLHIREIKRLQHEDNS 156
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 69 EKEFFAVCNKSQNVVCHFYKSDSPRCK-IVDMHLKI---LAKKHIETRFVKLDVERAPFL 124
EK F +++V+ FY CK + + K L + E + K+D L
Sbjct: 31 EKNFDEAVAANKHVLVEFYAPWCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETKL 90
Query: 125 TGRLKIRVIPTLGLVKDNKTKDFIVGFT 152
+ +++ PT+ KD K ++ G T
Sbjct: 91 GEKFQVQGYPTIKFFKDGKPSEYAGGRT 118
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 6/54 (11%)
Query: 5 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAE---MKLRA-KQKQE 54
++L Q +AQ+ ++++D +E+LDA S ++ QQ++AE KL A K+KQE
Sbjct: 4265 EELQQLLAQH-QQEVDDAMEKLDADRSRQQSSL-QQKLAEKRRKKLEAQKRKQE 4316
>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 39 QQRIAEMKLRAKQKQEWLAIGHGEYTEIDGEKEFFAVCNKSQNV 82
++ + EMK KQ Q+ + +GE+ D EK A+ K + V
Sbjct: 277 EEALEEMKQTIKQTQDRMMFSYGEFKAEDQEKMLAALNKKVEEV 320
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 16 ERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWL--AIGHGEYTEIDGE 69
E +++ +LD LE+ D E++ ++R+ E+K +++ E L + GE D E
Sbjct: 127 ESELEELRAQLDKLENSDTESLVEERMKELKANYEREVEELKERLAKGESDARDSE 182
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 82 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 141
VV F S CK + L++K+ + F+K+DV+ L + + +PT K
Sbjct: 30 VVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKIDVDVCQELAAKQGVTAMPTFQFFK- 88
Query: 142 NKTK 145
NK K
Sbjct: 89 NKVK 92
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 71 EFFAVCNKSQNV--VCHFYKSDSPRCKIVDMHLKILAKKHIETRFVK 115
+F + + S NV V HF+ +P C ++ L+ LAK++ F+K
Sbjct: 11 DFDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 180 DLLVPPSEAKKQKSLHIQSKKTIRGRDESDSDDFSD 215
DL PPS +QKS Q + T G D SD D SD
Sbjct: 382 DLCTPPSTPGEQKSPREQMQST--GADVSDVIDLSD 415
>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
Length = 642
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 180 DLLVPPSEAKKQKSLHIQSKKTIRGRDESDSDDFSD 215
DL PPS +QKS Q + T G D SD D SD
Sbjct: 237 DLCTPPSTPGEQKSPREQMQST--GADVSDVIDLSD 270
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 59 GHGEYTEIDGEKEFFAVCNK--SQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKL 116
G+G ++ + F + S+ VV F + CK + L+ K ++ F+K+
Sbjct: 6 GNGNVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVVFLKV 65
Query: 117 DVERAPFLTGRLKIRVIPTLGLVKDNKTK 145
DV++ IR +PT NK K
Sbjct: 66 DVDQCQLTAESCGIRAMPTFHFY-HNKAK 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,053,483
Number of Sequences: 59808
Number of extensions: 288691
Number of successful extensions: 811
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 18
length of query: 215
length of database: 16,821,457
effective HSP length: 79
effective length of query: 136
effective length of database: 12,096,625
effective search space: 1645141000
effective search space used: 1645141000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -