GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001711-TA|BGIBMGA001711-PA|IPR013766|Thioredoxin domain,
IPR012336|Thioredoxin-like fold
         (215 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.60 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 61  GEYTEIDGEKEFFAVCNKSQN 81
           GEYT+  G   ++ +CN+ +N
Sbjct: 895 GEYTKQPGMLAYYEICNRIRN 915


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 35  EAIRQQRIAEMKLRAKQKQEWLAIGHGEYTEIDGEKEFFAVCNKSQNVVCH 85
           E  RQQ  AE+ L   Q + W      +  +  G K   A+   +Q +  H
Sbjct: 255 ERRRQQLSAELGLNEAQIKIWFQNKRAKIKKASGTKNPLALQLMAQGLYNH 305


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 8   LQHVAQNVERQIDSEIERL 26
           L HV QNV  ++   I RL
Sbjct: 268 LSHVCQNVSTEVIGNILRL 286


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 61  GEYTEIDGEKEFFAVCNKSQNVVCHFYKSD 90
           G YT+  G   ++ VC   QN   + +  +
Sbjct: 359 GTYTKESGFLAYYEVCELLQNGATYIWDDE 388


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,068
Number of Sequences: 317
Number of extensions: 1855
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 215
length of database: 114,650
effective HSP length: 54
effective length of query: 161
effective length of database: 97,532
effective search space: 15702652
effective search space used: 15702652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)