GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001711-TA|BGIBMGA001711-PA|IPR013766|Thioredoxin domain,
IPR012336|Thioredoxin-like fold
         (215 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            26   0.75 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   2.3  
CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence re...    25   2.3  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   9.2  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 58 IGHGEYTEIDGEKEFFAVCNKSQNVVCHFYKSDS 91
          + + +YTE+  E +FF++   + N   H Y+  S
Sbjct: 47 LSNKDYTEVFHEDDFFSLTTPNANYPWHVYEPSS 80


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 124 LTGRLKIRVIPTLGLVKDNKTKDFIVGFTDLGNRDDFSTDILEWRIARSEAIEYSGDLLV 183
           L  RL  ++     L+K N+T  FI+ FT +     F  + L + + R   +EY+  +  
Sbjct: 780 LDSRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRN-LYYALVR-PLLEYASIIWN 837

Query: 184 PPS 186
           PP+
Sbjct: 838 PPT 840


>CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence
           receptor protein.
          Length = 284

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 146 DFIVGFTDLGNRDDFSTDILE 166
           +F+VGFT+ G  +DF  + +E
Sbjct: 93  EFLVGFTNKGQFEDFVVESVE 113


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 9   QHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHG 61
           Q   Q  ++Q   + ++    +    +  RQQ+  + +L+  Q+Q W  +  G
Sbjct: 189 QQQQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTTVVRG 241


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,844
Number of Sequences: 2123
Number of extensions: 8590
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 215
length of database: 516,269
effective HSP length: 61
effective length of query: 154
effective length of database: 386,766
effective search space: 59561964
effective search space used: 59561964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)