GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001710-TA|BGIBMGA001710-PA|IPR001841|Zinc finger,
RING-type, IPR011046|WD40-like
         (609 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    28   0.63 
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    26   3.3  
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    25   7.7  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   7.7  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    25   7.7  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 229 ITALQKQVEILQSEKSRTELELEKMKIAHRACVQQLEGLRSTLMKSQSNKEQPSRK 284
           I+ L  +V+     K R E ELE++KI      ++LE +R      +  +E+ SR+
Sbjct: 309 ISDLSDEVQGDNKSKERAEQELERLKITIAEKEKELEQVRPRYEAMRRKEEECSRE 364


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 106 LTSFSDESTRQSINEDSNSCASIRLNPRPPDDIEPPAKLRKMNE 149
           L  F D S  +  + D     + RL+  PP DI      R +NE
Sbjct: 416 LARFIDGSINEVFDYDQGKNGTFRLSLHPPSDIFEVIPKRAINE 459


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 94  PAQSEDSNLTSPLTSFSDESTRQSINEDSNSCAS 127
           PA   D + +S  +S SD  +  S + DS+S +S
Sbjct: 358 PANETDDSSSSSSSSSSDSDSDSSSSSDSSSSSS 391


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 94  PAQSEDSNLTSPLTSFSDESTRQSINEDSNSCAS 127
           PA   D + +S  +S SD  +  S + DS+S +S
Sbjct: 358 PANETDDSSSSSSSSSSDSDSDSSSSSDSSSSSS 391


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 220 RLVAADTSQITALQKQVEILQSEKSRTELELEKMKIAHRACVQQLEGLRSTLMKSQSNKE 279
           RL    T     LQ++ E  +  + + + ++EK+  AH    Q+   L ++L+ ++    
Sbjct: 116 RLAEQITRMCQLLQEEKEEAKRREEKLKAQMEKLAAAH----QRDRNLLNSLLAAKVAGG 171

Query: 280 QPSRKS 285
           QPS  S
Sbjct: 172 QPSASS 177


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,695
Number of Sequences: 2123
Number of extensions: 27425
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 7
length of query: 609
length of database: 516,269
effective HSP length: 68
effective length of query: 541
effective length of database: 371,905
effective search space: 201200605
effective search space used: 201200605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)