GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001710-TA|BGIBMGA001710-PA|IPR001841|Zinc finger,
RING-type, IPR011046|WD40-like
         (609 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.15 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   4.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   7.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 89  GPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSNSCASIRLNP 132
           G G LPA   DS ++       + ST    NED+N     RLNP
Sbjct: 237 GSGSLPASPADSGVSDV-----ESSTSSGGNEDANLLLKARLNP 275


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 99  DSNLTSPLTSFSDESTR--QSINEDSNSCASIR-LNPRPPDDIEPPAKLRKMNE 149
           + N+T  L + +++STR  Q  N    +  S R   P  P  ++PP K +K+++
Sbjct: 75  ERNITIKLDTRAEDSTRGEQEANLGYTNKMSTRGKRPASPGYVQPPTKHQKLDQ 128


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 247 ELELEKMKIAHRACVQQLEGLRSTLMKSQSNKEQPSRKSWRFALEK 292
           +LE     I H  C+ ++   R     ++ N    SRK  +FA EK
Sbjct: 286 DLEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFSLSRKLAKFAKEK 331


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 414 HYDVRNPSTYLRMLSSP 430
           HY+  +PST+L  LSSP
Sbjct: 45  HYERFSPSTHLMDLSSP 61


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 251 EKMKIAHRACVQQLEGLRSTLMKSQSNKEQPSRKSWRFALEK 292
           EK K  H  C Q  E L    ++S ++KE   +K   F +++
Sbjct: 60  EKSKNNHH-CNQDTEKLNQLEIESDNSKEVNDKKEENFIVDR 100


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 190 WLKAQKLKDRTCPTCKGKANLKDLR 214
           W+    L +RT P C  K ++ DL+
Sbjct: 137 WVLDSGLVNRTVPVCAPKLHVFDLK 161


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,471
Number of Sequences: 429
Number of extensions: 7783
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 609
length of database: 140,377
effective HSP length: 62
effective length of query: 547
effective length of database: 113,779
effective search space: 62237113
effective search space used: 62237113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)