Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001709-TA|BGIBMGA001709-PA|undefined
         (622 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   4.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   4.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 329 RTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCRKLE 388
           RTA    P   E +  E E         AD    L+A   + E   +S +A+   C K E
Sbjct: 297 RTAFLGSPEEAETFFRELEAPCPRNYNPADYFIQLLAIVPEKE--ESSRQAVNLICDKFE 354

Query: 389 ADNAVTQAALEQAT 402
             N   + ALE AT
Sbjct: 355 RSNIGVKIALEAAT 368


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 329 RTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCRKLE 388
           RTA    P   E +  E E         AD    L+A   + E   +S +A+   C K E
Sbjct: 297 RTAFLGSPEEAETFFRELEAPCPRNYNPADYFIQLLAIVPEKE--ESSRQAVNLICDKFE 354

Query: 389 ADNAVTQAALEQAT 402
             N   + ALE AT
Sbjct: 355 RSNIGVKIALEAAT 368


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.127    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,190
Number of Sequences: 317
Number of extensions: 3354
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 622
length of database: 114,650
effective HSP length: 61
effective length of query: 561
effective length of database: 95,313
effective search space: 53470593
effective search space used: 53470593
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)